Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011832 (kbl) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011832 showshow history
Names
kbl JW3592 ECK3607 b3617
Product
glycine C-acetyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3791355 3792551 1197 399
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001361
EnteroFam0011832: Trusted threshold=1080; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR011282 (IPR011282 2-amino-3-ketobutyrate coenzyme A ligase) Apr 2008
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Apr 2008
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Apr 2008
Automated Process Approved IPR001917 (IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site) Apr 2008
Automated Process Approved IPR004839 (IPR004839 Aminotransferase, class I/classII) Apr 2008
Automated Process Approved PF00155 (PF00155 Aminotransferase class I and II) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0006567 threonine catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011282
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001917
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016769 transferase activity, transferring nitrogenous groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001917
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008890 glycine C-acetyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011282
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name kbl Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3607 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3592 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3617 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product glycine C-acetyltransferase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name 2-amino-3-ketobutyrate CoA ligase (glycine acetyltransferase) Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0011832: Trusted threshold=1080; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001361
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR004839 Aminotransferase, class I/classII Protein Sequence Similarity - InterPro Domain: IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00155 Aminotransferase class I and II Protein Sequence Similarity - PFAM Model Name: PF00155
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011282 2-amino-3-ketobutyrate coenzyme A ligase Protein Sequence Similarity - InterPro Domain: IPR011282
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site Protein Sequence Similarity - InterPro Domain: IPR001917
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.3.1.29 Published Annotation - Swiss-Prot Accession Number: P0AB77 Feb 2006
Person Uncurated MultiFun 1.7.30 (metabolism; central intermediary metabolism; threonine catabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.3 (metabolism; carbon utilization; amino acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011832 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10512 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AB77 Published Annotation - Swiss-Prot Accession Number: P0AB77 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AB77 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948138 Published Annotation - Entrez Gene Database ID: 948138
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1790046 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Pool, multipurpose conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note 2-amino-3-ketobutyrate CoA ligase (glycine acetyltransferase); GO_process: GO:0009063 - cellular amino acid catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76641.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0006567 threonine catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011282
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001917
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016769 transferase activity, transferring nitrogenous groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001917
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008890 glycine C-acetyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011282
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001361 kbl CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002489 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001746 kbl CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001835 kbl CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001677 kbl CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001833 kbl CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004464 kbl CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004101 kbl CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000159 kbl CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000660 kbl CDS
Automated Process Approved Go view Dickeya chrysanthemi Ech1591 AFK-0009118 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017701 kbl CDS
Automated Process Approved Go view Dickeya parazeae Ech586 AGC-0004083 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000419 kbl CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001552 kbl CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004680 kbl CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003757 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007449 kbl CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003674 kbl CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000560 kbl CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005420 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007030 kbl CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008523 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080621 kbl CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004392 kbl CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005004 kbl CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006954 kbl CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010072 kbl CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004110 kbl CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008553 kbl CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005544 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008321 kbl CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006835 kbl CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006385 kbl CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005040 kbl CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009824 kbl CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005123 kbl CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007636 kbl CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005422 kbl CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005488 kbl CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005330 kbl CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005216 kbl CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005815 kbl CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028688 kbl CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005333 kbl CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008517 kbl CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004244 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003371 kbl CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003747 kbl CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004415 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004286 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004248 kbl CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004153 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178297 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003972 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003951 kbl CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134569 kbl CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002870 CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004172 kbl CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003752 kbl CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000846 kbl CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004010 kbl CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002545 kbl CDS
Automated Process Approved Go view Musicola paradisiaca Ech703 AGA-0004548 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003051 CDS
Automated Process Approved Go view Pantoea agglomerans SL1-M5 ALY-0000056 CDS
Automated Process Approved Go view Pantoea ananatis AJ13355 AOV-0003175 kbl CDS
Automated Process Approved Go view Pantoea ananatis B1-9 APL-0000810 CDS
Automated Process Approved Go view Pantoea ananatis LMG 20103 AKB-0004000 kbl CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000154 CDS
Automated Process Approved Go view Pantoea sp. At-9b AGM-0011626 CDS
Automated Process Approved Go view Pantoea sp. aB AJV-0000687 CDS
Person Uncurated Go view Pantoea stewartii DC283 ACV-0291535 kbl pseudogene
Automated Process Approved Go view Pantoea vagans C9-1 ALK-0006938 kbl CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060368 kbl CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000041 kbl CDS
Automated Process Approved Go view Pectobacterium parmentieri WPP163 AFJ-0003021 kbl CDS
Automated Process Approved Go view Pectobacterium sp. PC1 AFL-0009392 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147847 kbl CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008094 kbl CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004123 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004247 kbl CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008342 kbl CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011630 kbl CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011354 kbl CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005153 kbl CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008392 kbl CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005741 kbl CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006062 kbl CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007488 kbl CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008344 kbl CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006502 kbl CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003597 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003560 kbl CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004625 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008515 kbl CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004477 kbl CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007976 kbl CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004783 kbl CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113561 kbl CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085536 kbl CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004476 kbl CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101475 kbl CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005499 kbl CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004927 kbl CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008391 kbl CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001040 kbl CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0268334 kbl CDS
Person Approved Go view Shigella boydii 227 ADV-0003954 kbl CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009465 kbl CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003194 kbl CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004566 kbl CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075385 kbl CDS
Person Approved Go view Shigella flexneri 301 ABT-0089879 kbl CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004157 kbl CDS
Person Approved Go view Shigella sonnei 046 ADD-0004127 kbl CDS
Person Approved Go view Vibrio cholerae N16961 ADH-0003779 VCA0886 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000196 kbl CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001330 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000223 kbl CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003168 kbl CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003848 kbl CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001728 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234372 kbl CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004169 kbl CDS
Person Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004155 kbl CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007787 kbl CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003229 kbl CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115521 kbl CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007921 kbl CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006262 kbl CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001165 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005485 kbl CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007967 kbl CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029667 kbl CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005080 kbl CDS
Person Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004555 kbl CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004620 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008868 kbl CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0003998 kbl CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000063 kbl CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000064 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004921 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004832 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001107 kbl CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21349mutantTn5 InsertionRequest the StrainABE-0011832kblkbl::Tn5KAN-I-SceI at position 687 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3786355 to 3797551
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011818gpmMCDSforward37852603786804Downstream
ABE-0011820envCCDSforward37868383788097Downstream
ABE-0011824yibQCDSforward37881013789060Downstream
ABE-0011826waaHCDScomplement37890473790081Downstream
ABE-0011830tdhCDScomplement37903203791345Downstream
ABE-0011832kblCDScomplement37913553792551Matches
ABE-0011838htrLCDScomplement37928263793683Upstream
ABE-0011843rfaDCDSforward37939873794919Upstream
ABE-0011845waaFCDSforward37949293795975Upstream
ABE-0011847waaCCDSforward37959793796938Upstream
ABE-0011849waaLCDSforward37969483798207Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.