Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011845 (waaF) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011845 showshow history
Names
waaF rfaF JW3595 ECK3610 b3620
Product
ADP-heptose:LPS heptosyltransferase II
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3794929 3795975 1047 349
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001363
EnteroFam0011845: Trusted threshold=944.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR011910 (IPR011910 ADP-heptose--LPS heptosyltransferase 2) Apr 2008
Automated Process Approved IPR002201 (IPR002201 Glycosyl transferase, family 9) Apr 2008
Automated Process Approved PF01075 (PF01075 Glycosyltransferase family 9 (heptosyltransferase)) Jul 2018
Automated Process Uncurated GT9 (GT9 Glycosyl Transferase Family 9) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002201
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009103 lipopolysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011910
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002201
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016757 glycosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011910
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name waaF Published Annotation - PubMed ID: 9004408
Reference: Escherichia coli K-12 		Apr 2020
Person Approved synonym JW3595 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym rfaF Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3610 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3620 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product ADP-heptose:LPS heptosyltransferase II Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name ADP-heptose; LPS heptosyltransferase II Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name ADP-heptose--lps heptosyltransferase II; lipopolysaccharide core biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0011845: Trusted threshold=944.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001363
Reference: EnteroFams 		Jan 2006
Automated Process Uncurated protein family GT9 Glycosyl Transferase Family 9 Protein Sequence Similarity - CAZy Model Name: GT9
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002201 Glycosyl transferase, family 9 Protein Sequence Similarity - InterPro Domain: IPR002201
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011910 ADP-heptose--LPS heptosyltransferase 2 Protein Sequence Similarity - InterPro Domain: IPR011910
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01075 Glycosyltransferase family 9 (heptosyltransferase) Protein Sequence Similarity - PFAM Model Name: PF01075
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 2.4.-.- Published Annotation - Database Name: EC2GO: GO:0016757
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 2.-.-.- Published Annotation - Swiss-Prot Accession Number: P37692 Feb 2006
Automated Process Approved EC number 2.4.1.- Published Annotation - KEGG Database Name: eco:b3620
Reference: Erwinia chrysanthemi 3937 		Sep 2007
Person Uncurated MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.3.2 (metabolism; macromolecules (cellular constituent) biosynthesis; lipopolysaccharide; core region) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011845 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P37692 Published Annotation - Swiss-Prot Accession Number: P37692 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P37692 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12210 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790050 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948135 Published Annotation - Entrez Gene Database ID: 948135
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved function enzyme; Macromolecule metabolism: Lipopolysaccharide Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note ADP-heptose--lps heptosyltransferase II; lipopolysaccharide core biosynthesis; GO_function: GO:0042280 - cell surface antigen activity, host-interacting; GO_process: GO:0009244 - lipopolysaccharide core region biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76644.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009103 lipopolysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011910
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002201
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002201
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016757 glycosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011910
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001363 rfaF CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000870 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000787 rfaF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000581 rfaF CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000295 rfaF CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000454 waaF CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001483 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002468 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004462 rfaF CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004103 rfaF CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000157 rfaF CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000658 rfaF CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009120 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017697 rfaF CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004086 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000417 rfaF CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296234 rfaF CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000160 waaF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000089 waaF CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001550 rfaF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004678 rfaF CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003759 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007447 rfaF CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003676 rfaF CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000558 rfaF CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005418 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007033 rfaF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008097 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080623 rfaF CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004394 rfaF CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005001 rfaF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006957 rfaF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010075 rfaF CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004112 rfaF CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008555 rfaF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005547 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008324 rfaF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006838 rfaF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006388 rfaF CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009827 rfaF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005120 rfaF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007640 rfaF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005425 rfaF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005491 rfaF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005333 rfaF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005219 rfaF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005818 rfaF CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028691 rfaF CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005331 rfaF CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008519 rfaF CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004242 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003374 rfaF CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003744 rfaF CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004413 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004288 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004246 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004155 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178299 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003975 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003954 rfaF CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134572 rfaF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002873 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004174 rfaF CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003750 rfaF CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000843 rfaF CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004012 waaF CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002543 rfaF CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004546 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003053 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000058 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003177 rfaF CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000808 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0004002 rfaF CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000152 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011624 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000689 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287164 rfaF CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006940 rfaf3 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060366 rfaF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000085 waaF CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003444 waaF CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003019 rfaF CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009394 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147852 rfaF CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005081 rfaF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008096 rfaF CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004121 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004249 rfaF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008344 rfaF CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011635 rfaF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011350 rfaF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005151 rfaF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008394 rfaF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005743 rfaF CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006060 rfaF CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006945 rfaF CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007490 rfaF CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008346 rfaF CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006500 rfaF CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003599 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003562 rfaF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004627 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008517 rfaF CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004475 rfaF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007978 rfaF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004785 rfaF CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113558 rfaF CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085534 rfaF CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004478 rfaF CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101484 rfaF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005497 rfaF CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004925 rfaF CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008393 rfaF CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001038 rfaF CDS
Person Approved Go view Shigella boydii 227 ADV-0003956 rfaF CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009467 rfaF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003200 rfaF CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004568 rfaF CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075383 rfaF CDS
Person Approved Go view Shigella flexneri 301 ABT-0089882 rfaF CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004154 waaF CDS
Person Approved Go view Shigella sonnei 046 ADD-0004125 rfaF CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000252 VC0236 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000201 rfaF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001328 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000219 rfaF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003759 rfaF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003846 rfaF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001730 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234370 rfaF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004167 rfaF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004157 rfaF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007789 rfaF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003231 rfaF CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115517 rfaF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007923 rfaF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006264 rfaF CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001163 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005487 rfaF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007965 rfaF CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029670 rfaF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005082 rfaF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004557 rfaF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004622 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008422 rfaF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0003996 rfaF CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000061 rfaF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000062 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004923 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004845 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001105 rfaF CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21351mutantTn5 InsertionRequest the StrainABE-0011845waaFrfaF::Tn5KAN-I-SceI at position 485 in Plus orientation ,- pKD460Blattner Laboratory
FB23527mutantTn5 InsertionRequest the StrainABE-0011845waaFrfaF::Tn5KAN-I-SceI at position 485 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3789929 to 3800975
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011826waaHCDScomplement37890473790081Upstream
ABE-0011830tdhCDScomplement37903203791345Upstream
ABE-0011832kblCDScomplement37913553792551Upstream
ABE-0011838htrLCDScomplement37928263793683Upstream
ABE-0011843rfaDCDSforward37939873794919Upstream
ABE-0011845waaFCDSforward37949293795975Matches
ABE-0011847waaCCDSforward37959793796938Downstream
ABE-0011849waaLCDSforward37969483798207Downstream
ABE-0285797yibXCDScomplement37977723798014Downstream
ABE-0285798yibYCDScomplement37980393798149Downstream
ABE-0011851waaUCDScomplement37982393799312Downstream
ABE-0011854waaZCDScomplement37993453800196Downstream
ABE-0011856waaYCDScomplement38002673800965Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.