Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011847 (waaC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011847 showshow history
Names
waaC yibC rfaC JW3596 ECK3611 b3621
Product
ADP-heptose:LPS heptosyl transferase I
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3795979 3796938 960 320
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001364
EnteroFam0011847: Trusted threshold=810.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR011908 (IPR011908 Lipopolysaccharide heptosyltransferase I) Apr 2008
Automated Process Approved IPR002201 (IPR002201 Glycosyl transferase, family 9) Apr 2008
Automated Process Approved PF01075 (PF01075 Glycosyltransferase family 9 (heptosyltransferase)) Jul 2018
Automated Process Uncurated GT9 (GT9 Glycosyl Transferase Family 9) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002201
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009103 lipopolysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011908
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008920 lipopolysaccharide heptosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011908
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002201
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016757 glycosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011908
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name waaC Published Annotation - PubMed ID: 9004408
Reference: Escherichia coli K-12 		Apr 2020
Automated Process Approved synonym rfaC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Automated Process Approved synonym yibC Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW3596 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3611 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3621 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product ADP-heptose:LPS heptosyl transferase I Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name heptosyl transferase I; lipopolysaccharide core biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name ADP-heptose; LPS heptosyl transferase I Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0011847: Trusted threshold=810.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001364
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF01075 Glycosyltransferase family 9 (heptosyltransferase) Protein Sequence Similarity - PFAM Model Name: PF01075
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002201 Glycosyl transferase, family 9 Protein Sequence Similarity - InterPro Domain: IPR002201
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated protein family GT9 Glycosyl Transferase Family 9 Protein Sequence Similarity - CAZy Model Name: GT9
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011908 Lipopolysaccharide heptosyltransferase I Protein Sequence Similarity - InterPro Domain: IPR011908
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.-.-.- Published Annotation - Swiss-Prot Accession Number: P24173 Feb 2006
Automated Process Uncurated EC number 2.4.-.- Published Annotation - Database Name: EC2GO: GO:0016757
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.6.3.2 (metabolism; macromolecules (cellular constituent) biosynthesis; lipopolysaccharide; core region) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11189 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P24173 Published Annotation - Swiss-Prot Accession Number: P24173 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P24173 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948136 Published Annotation - Entrez Gene Database ID: 948136
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0011847 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790051 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Macromolecule metabolism: Lipopolysaccharide Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note heptosyl transferase I; lipopolysaccharide core biosynthesis; GO_component: GO:0019866 - organelle inner membrane; GO_function: GO:0042280 - cell surface antigen activity, host-interacting; GO_process: GO:0009244 - lipopolysaccharide core region biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76645.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002201
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009103 lipopolysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011908
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016757 glycosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011908
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0008920 lipopolysaccharide heptosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011908
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002201
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001364 rfaC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000871 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001220 rfaC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000963 rfaC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000296 rfaC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001488 waaC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001484 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002469 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004461 rfaC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004104 rfaC CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000156 rfaC CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000657 rfaC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009121 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017696 rfaC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004087 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000416 rfaC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296232 rfaC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000159 waaC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000088 waaC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001549 rfaC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004677 rfaC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003760 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007446 rfaC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003677 rfaC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000557 rfaC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005417 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007034 rfaC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008098 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080624 rfaC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010076 rfaC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004113 rfaC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008556 rfaC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005548 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008325 rfaC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006839 rfaC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009828 rfaC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005119 rfaC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007641 rfaC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005426 rfaC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005492 rfaC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005334 rfaC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005220 rfaC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005819 rfaC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028692 rfaC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005330 rfaC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008520 rfaC CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003375 rfaC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003743 rfaC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003976 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003955 rfaC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134573 rfaC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002874 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004175 rfaC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003749 rfaC CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000842 rfaC CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004013 waaC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002542 rfaC CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004545 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003054 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000059 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003178 rfaC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000807 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0004003 rfaC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000151 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011623 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000690 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287165 rfaC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006941 rfaC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060365 rfaC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000086 waaC CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003443 waaC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003018 rfaC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009395 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147854 rfaC CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005080 waaC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008097 rfaC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004120 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004250 rfaC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008345 rfaC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011637 rfaC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011347 rfaC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005150 rfaC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008395 rfaC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005744 rfaC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006059 rfaC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006946 rfaC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007491 rfaC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008347 rfaC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006499 rfaC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003600 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003563 rfaC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004628 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008518 rfaC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004474 rfaC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007979 rfaC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004786 rfaC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113556 rfaC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085533 rfaC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004479 rfaC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101487 rfaC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005496 rfaC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004924 rfaC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008394 rfaC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001037 rfaC CDS
Person Approved Go view Shigella boydii 227 ADV-0003957 rfaC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009468 rfaC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003201 rfaC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004569 rfaC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075382 rfaC CDS
Person Approved Go view Shigella flexneri 301 ABT-0089883 rfaC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004153 waaC CDS
Person Approved Go view Shigella sonnei 046 ADD-0004124 rfaC CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000202 rfaC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001327 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000217 rfa-2 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003758 rfaC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003845 rfaC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001731 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234369 rfaC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004166 rfaC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004158 rfaC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007790 rfaC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003232 rfaC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115515 rfaC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007924 rfaC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006265 rfaC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001162 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005488 rfaC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007964 rfaC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029671 rfaC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005083 rfaC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004558 rfaC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004623 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008421 rfaC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0003995 rfaC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000060 rfaC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000061 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004924 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004849 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001104 rfaC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3790979 to 3801938
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011830tdhCDScomplement37903203791345Upstream
ABE-0011832kblCDScomplement37913553792551Upstream
ABE-0011838htrLCDScomplement37928263793683Upstream
ABE-0011843rfaDCDSforward37939873794919Upstream
ABE-0011845waaFCDSforward37949293795975Upstream
ABE-0011847waaCCDSforward37959793796938Matches
ABE-0011849waaLCDSforward37969483798207Downstream
ABE-0285797yibXCDScomplement37977723798014Downstream
ABE-0285798yibYCDScomplement37980393798149Downstream
ABE-0011851waaUCDScomplement37982393799312Downstream
ABE-0011854waaZCDScomplement37993453800196Downstream
ABE-0011856waaYCDScomplement38002673800965Downstream
ABE-0011858waaJCDScomplement38009833801999Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.