Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011854 (waaZ) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011854 showshow history
Names
waaZ JW3599 ECK3614 rfaZ b3624
Product
lipopolysaccharide core biosynthesis protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3799345 3800196 852 284
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR031026 (IPR031026 3-deoxy-D-manno-oct-2-ulosonate III transferase WaaZ) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name waaZ Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym rfaZ Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK3614 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3599 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3624 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product lipopolysaccharide core biosynthesis protein Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name lipopolysaccharide core biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR031026 3-deoxy-D-manno-oct-2-ulosonate III transferase WaaZ Protein Sequence Similarity - InterPro Domain: IPR031026
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.3.2 (metabolism; macromolecules (cellular constituent) biosynthesis; lipopolysaccharide; core region) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11426 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011854 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948146 Published Annotation - Entrez Gene Database ID: 948146
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1790054 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P27241 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P27241 Published Annotation - Swiss-Prot Accession Number: P27241 Jan 2005
Person Approved function enzyme; Macromolecule metabolism: Lipopolysaccharide Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note lipopolysaccharide core biosynthesis; GO_component: GO:0019866 - organelle inner membrane; GO_function: GO:0042280 - cell surface antigen activity, host-interacting; GO_process: GO:0009244 - lipopolysaccharide core region biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76648.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006874 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0005234 rfaZ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0005914 rfaZ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003876 waaZ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0005014 waaZ CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001546 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004116 rfaZ CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003378 rfaZ CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003740 rfaZ CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008100 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004117 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004253 rfaZ CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011645 rfaZ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005147 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008398 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005747 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006056 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006949 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007494 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008350 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006496 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003603 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003566 waaZ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004631 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008521 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004471 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007982 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004789 CDS
Person Uncurated Go view Salmonella Typhi CT18 ABX-0113552 waaZ CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085530 waaZ CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004482 rfaZ CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101494 rfaZ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005493 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004921 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008397 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3794345 to 3805196
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011843rfaDCDSforward37939873794919Downstream
ABE-0011845waaFCDSforward37949293795975Downstream
ABE-0011847waaCCDSforward37959793796938Downstream
ABE-0011849waaLCDSforward37969483798207Downstream
ABE-0285797yibXCDScomplement37977723798014Downstream
ABE-0285798yibYCDScomplement37980393798149Downstream
ABE-0011851waaUCDScomplement37982393799312Downstream
ABE-0011854waaZCDScomplement37993453800196Matches
ABE-0011856waaYCDScomplement38002673800965Upstream
ABE-0011858waaJCDScomplement38009833801999Upstream
ABE-0011860waaOCDScomplement38020393803058Upstream
ABE-0011862waaBCDScomplement38030583804137Upstream
ABE-0011864waaSCDScomplement38041813805116Upstream
ABE-0011866waaPCDScomplement38051533805950Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.