Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011856 (waaY) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011856 showshow history
Names
waaY JW3600 ECK3615 rfaY b3625
Product
lipopolysaccharide core biosynthesis protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3800267 3800965 699 233
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR009330 (IPR009330 Lipopolysaccharide core heptose(II) kinase) Apr 2008
Automated Process Approved IPR000719 (IPR000719 Protein kinase domain) Apr 2008
Automated Process Approved IPR011009 (IPR011009 Protein kinase-like domain superfamily) Apr 2008
Automated Process Approved PF06176 (PF06176 Lipopolysaccharide core biosynthesis protein (WaaY)) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006468 protein phosphorylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000719
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009330
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000719
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004672 protein kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000719
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name waaY Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW3600 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3615 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym rfaY Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b3625 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product lipopolysaccharide core biosynthesis protein Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name lipopolysaccharide core biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name lipopolysaccharide core biosynthesis; modification of heptose region of the core Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR011009 Protein kinase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR011009
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR009330 Lipopolysaccharide core heptose(II) kinase Protein Sequence Similarity - InterPro Domain: IPR009330
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000719 Protein kinase domain Protein Sequence Similarity - InterPro Domain: IPR000719
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF06176 Lipopolysaccharide core biosynthesis protein (WaaY) Protein Sequence Similarity - PFAM Model Name: PF06176
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated EC number 2.7.-.- Protein Sequence Similarity - InterPro Domain: IPR011009
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Person Uncurated MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.3.2 (metabolism; macromolecules (cellular constituent) biosynthesis; lipopolysaccharide; core region) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11425 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011856 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P27240 Published Annotation - Swiss-Prot Accession Number: P27240 Jan 2005
Automated Process Approved db xref GeneID:948145 Published Annotation - Entrez Gene Database ID: 948145
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1790055 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P27240 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Macromolecule metabolism: Lipopolysaccharide Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note lipopolysaccharide core biosynthesis; GO_component: GO:0019866 - organelle inner membrane; GO_function: GO:0042280 - cell surface antigen activity, host-interacting; GO_process: GO:0009244 - lipopolysaccharide core region biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76649.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006468 protein phosphorylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000719
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009330
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004672 protein kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000719
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000719
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0004863 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003179 rfaY CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003517 rfaY CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003049 waaY CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001545 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004117 rfaY CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003379 rfaY CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003739 rfaY CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004241 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008101 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004116 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004254 rfaY CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008349 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011646 rfaY CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011338 waaY CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005146 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008399 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005748 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006055 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006950 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007495 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008351 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006495 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003604 waaY CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003567 waaY CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004632 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008522 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004470 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007983 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004790 CDS
Person Uncurated Go view Salmonella Typhi CT18 ABX-0113551 waaY CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085529 waaY CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004483 rfaY CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101495 rfaY CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005492 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004920 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008398 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3795267 to 3805965
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011845waaFCDSforward37949293795975Downstream
ABE-0011847waaCCDSforward37959793796938Downstream
ABE-0011849waaLCDSforward37969483798207Downstream
ABE-0285797yibXCDScomplement37977723798014Downstream
ABE-0285798yibYCDScomplement37980393798149Downstream
ABE-0011851waaUCDScomplement37982393799312Downstream
ABE-0011854waaZCDScomplement37993453800196Downstream
ABE-0011856waaYCDScomplement38002673800965Matches
ABE-0011858waaJCDScomplement38009833801999Upstream
ABE-0011860waaOCDScomplement38020393803058Upstream
ABE-0011862waaBCDScomplement38030583804137Upstream
ABE-0011864waaSCDScomplement38041813805116Upstream
ABE-0011866waaPCDScomplement38051533805950Upstream
ABE-0011868waaGCDScomplement38059433807067Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.