Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011862 (waaB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011862 showshow history
Names
waaB phx* syn* lps JW3603 ECK3618 rfaB b3628
Product
UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3803058 3804137 1080 360
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001296 (IPR001296 Glycosyl transferase, family 1) Apr 2008
Automated Process Approved IPR028098 (IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain) Jul 2018
Automated Process Approved PF13439 (PF13439 Glycosyltransferase Family 4) Jul 2018
Automated Process Approved PF00534 (PF00534 Glycosyl transferases group 1) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001296
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name waaB Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW3603 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym lps Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK3618 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym rfaB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved synonym syn* Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym phx* Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b3628 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase Published Annotation - Database Name: GenProtEC Jan 2006
Person Uncurated alternate product name UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6- D-galactosyltransferase Published Annotation - Swiss-Prot Accession Number: P27127 Jan 2006
Protein Family
Automated Process Approved protein family IPR001296 Glycosyl transferase, family 1 Protein Sequence Similarity - InterPro Domain: IPR001296
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR028098
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF13439 Glycosyltransferase Family 4 Protein Sequence Similarity - PFAM Model Name: PF13439
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00534 Glycosyl transferases group 1 Protein Sequence Similarity - PFAM Model Name: PF00534
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.4.1.- Published Annotation - Swiss-Prot Accession Number: P27127 Feb 2006
Person Uncurated MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated comment The coordinates of rfaB have been changed from those reported in the GenBank entry (GBAN:U00096.2) to correspond to the start site predicted by EasyGene and by GeneMark.hmm using multiple models, removing 10 codons from the N-terminus. Unpublished Sequence Analysis - Author Name, Email; Comment: Eric Neeno-Eckwall, ecneenoeckwa@wisc.edu
Reference: Escherichia coli K-12 MG1655 		Sep 2008
Automated Process Approved db xref EcoGene:EG11351 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011862 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P27127 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P27127 Published Annotation - Swiss-Prot Accession Number: P27127 Jan 2005
Automated Process Approved db xref GI:226510984 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Surface polysaccharides & antigens Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_function: GO:0042280 - cell surface antigen activity, host-interacting Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76652.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001296
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003943 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004618 rfaB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004755 waaB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002687 waaB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0004609 waaB CDS
Ortholog
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004109 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001542 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004120 rfaB CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003382 rfaB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003736 rfaB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004238 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004257 rfaB CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003570 waaB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113545 waaB CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085526 waaB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101501 rfaB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0268339 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3798058 to 3809137
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011849waaLCDSforward37969483798207Downstream
ABE-0285798yibYCDScomplement37980393798149Downstream
ABE-0011851waaUCDScomplement37982393799312Downstream
ABE-0011854waaZCDScomplement37993453800196Downstream
ABE-0011856waaYCDScomplement38002673800965Downstream
ABE-0011858waaJCDScomplement38009833801999Downstream
ABE-0011860waaOCDScomplement38020393803058Overlaps Downstream
ABE-0011862waaBCDScomplement38030583804137Matches
ABE-0011864waaSCDScomplement38041813805116Upstream
ABE-0011866waaPCDScomplement38051533805950Upstream
ABE-0011868waaGCDScomplement38059433807067Upstream
ABE-0011870waaQCDScomplement38070643808098Upstream
ABE-0285791rirAncRNAcomplement38081663808238Upstream
ABE-0011873waaACDSforward38085403809817Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.