Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011868 (waaG) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011868 showshow history
Names
waaG JW3606 ECK3621 rfaG b3631
Product
glucosyltransferase I
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3805943 3807067 1125 375
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001296 (IPR001296 Glycosyl transferase, family 1) Apr 2008
Automated Process Approved IPR028098 (IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain) Jul 2018
Automated Process Approved PF00534 (PF00534 Glycosyl transferases group 1) Jul 2018
Automated Process Approved PF13439 (PF13439 Glycosyltransferase Family 4) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001296
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009432 SOS response Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name waaG Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK3621 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym rfaG Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW3606 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3631 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product glucosyltransferase I Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name glucosyltransferase I; lipopolysaccharide core biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name glucosyltransferase I Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family PF13439 Glycosyltransferase Family 4 Protein Sequence Similarity - PFAM Model Name: PF13439
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00534 Glycosyl transferases group 1 Protein Sequence Similarity - PFAM Model Name: PF00534
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR028098
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001296 Glycosyl transferase, family 1 Protein Sequence Similarity - InterPro Domain: IPR001296
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 2.4.1.- Protein Sequence Similarity - InterPro Domain: IPR001296
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Person Uncurated MultiFun 5.8 (cell processes; SOS response) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.3.2 (metabolism; macromolecules (cellular constituent) biosynthesis; lipopolysaccharide; core region) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P25740 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790061 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011868 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11339 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P25740 Published Annotation - Swiss-Prot Accession Number: P25740 Jan 2005
Automated Process Approved db xref GeneID:948149 Published Annotation - Entrez Gene Database ID: 948149
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Macromolecule metabolism: Lipopolysaccharide Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note glucosyltransferase I; lipopolysaccharide core biosynthesis; GO_component: GO:0019866 - organelle inner membrane; GO_function: GO:0042280 - cell surface antigen activity, host-interacting; GO_process: GO:0009244 - lipopolysaccharide core region biosynthetic process; GO_process: GO:0009432 - SOS response Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76655.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009432 SOS response Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001296
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002414 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002274 rfaG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002105 waaG CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000729 waaG CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001861 waaG CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004453 rfaG CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004111 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000146 rfaG CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001539 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004669 rfaG CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003768 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007438 rfaG CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003685 rfaG CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000549 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005409 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010697 rfaG CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008106 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080632 waaG CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004404 rfaG CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004993 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008927 rfaG CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007442 rfaG CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004123 rfaG CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008564 rfaG CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005555 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008332 rfaG CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006846 rfaG CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006397 rfaG CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006859 rfaG CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009835 rfaG CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005112 rfaG CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007648 rfaG CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005433 rfaG CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005499 rfaG CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005341 rfaG CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005227 rfaG CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005826 rfaG CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028700 rfaG CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005322 rfaG CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008528 rfaG CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004233 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003385 rfaG CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003733 rfaG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004404 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004434 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004235 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004164 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178310 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003983 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003963 rfaG CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134580 rfaG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002881 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004183 rfaG CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000834 CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060361 waaG CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003641 waaG CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003014 waaG CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005079 waaG CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008106 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004110 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004260 rfaG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008355 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011661 rfaG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011323 rfaG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005140 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008405 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005754 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006049 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006957 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007502 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008357 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006489 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003610 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003573 waaG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004638 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008527 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004464 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007989 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004796 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113540 waaG CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085522 waaG CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004489 rfaG CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101507 rfaG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005486 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004914 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008403 CDS
Person Approved Go view Shigella boydii 227 ADV-0003964 rfaG CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009476 rfaG CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003208 rfaG CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004577 rfaG CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075375 waaG CDS
Person Approved Go view Shigella flexneri 301 ABT-0089890 waaG CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004146 waaG CDS
Person Approved Go view Shigella sonnei 046 ADD-0004116 waaG CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3800943 to 3812067
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011856waaYCDScomplement38002673800965Downstream
ABE-0011858waaJCDScomplement38009833801999Downstream
ABE-0011860waaOCDScomplement38020393803058Downstream
ABE-0011862waaBCDScomplement38030583804137Downstream
ABE-0011864waaSCDScomplement38041813805116Downstream
ABE-0011866waaPCDScomplement38051533805950Overlaps Downstream
ABE-0011868waaGCDScomplement38059433807067Matches
ABE-0011870waaQCDScomplement38070643808098Overlaps Upstream
ABE-0285791rirAncRNAcomplement38081663808238Upstream
ABE-0011873waaACDSforward38085403809817Upstream
ABE-0011875coaDCDSforward38098253810304Upstream
ABE-0285626repeat_regionforward38103123810333Upstream
ABE-0011877mutMCDScomplement38103433811152Upstream
ABE-0011883rpmGCDScomplement38112503811417Upstream
ABE-0011885rpmBCDScomplement38114383811674Upstream
ABE-0011889yicRCDScomplement38118913812559Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.