Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011870 (waaQ) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011870 showshow history
Names
waaQ rfaQ JW3607 ECK3622 b3632
Product
lipopolysaccharide core biosynthesis protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3807064 3808098 1035 345
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001365
EnteroFam0011870: Trusted threshold=829.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR002201 (IPR002201 Glycosyl transferase, family 9) Apr 2008
Automated Process Approved IPR011916 (IPR011916 Lipopolysaccharide heptosyltransferase III, putative) Apr 2008
Automated Process Approved PF01075 (PF01075 Glycosyltransferase family 9 (heptosyltransferase)) Jul 2018
Automated Process Uncurated GT9 (GT9 Glycosyl Transferase Family 9) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002201
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016757 glycosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002201
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002201
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name waaQ Published Annotation - PubMed ID: 9004408
Reference: Escherichia coli K-12
Apr 2020
Person Approved synonym JW3607 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym rfaQ Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655
Sep 2007
Person Approved synonym ECK3622 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3632 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product lipopolysaccharide core biosynthesis protein Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name lipopolysaccharide core biosynthesis; modification of heptose region of core Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name lipopolysaccharide core biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0011870: Trusted threshold=829.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001365
Reference: EnteroFams
Jan 2006
Automated Process Uncurated protein family GT9 Glycosyl Transferase Family 9 Protein Sequence Similarity - CAZy Model Name: GT9
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR011916 Lipopolysaccharide heptosyltransferase III, putative Protein Sequence Similarity - InterPro Domain: IPR011916
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR002201 Glycosyl transferase, family 9 Protein Sequence Similarity - InterPro Domain: IPR002201
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family PF01075 Glycosyltransferase family 9 (heptosyltransferase) Protein Sequence Similarity - PFAM Model Name: PF01075
Reference: Escherichia coli K-12 MG1655
Jul 2018
Other
Automated Process Uncurated EC number 2.4.-.- Published Annotation - Database Name: EC2GO: GO:0016757
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved EC number 2.4.1.- Published Annotation - KEGG Database Name: eco:b3632
Reference: Erwinia chrysanthemi 3937
Sep 2007
Person Approved EC number 2.-.-.- Published Annotation - Swiss-Prot Accession Number: P25742 Feb 2006
Person Uncurated MultiFun 1.6.3.2 (metabolism; macromolecules (cellular constituent) biosynthesis; lipopolysaccharide; core region) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P25742 Published Annotation - Swiss-Prot Accession Number: P25742 Jan 2005
Automated Process Approved db xref GI:1790062 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG11341 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P25742 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0011870 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:948155 Published Annotation - Entrez Gene Database ID: 948155
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved function enzyme; Macromolecule metabolism: Lipopolysaccharide Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note lipopolysaccharide core biosynthesis; GO_component: GO:0019866 - organelle inner membrane; GO_function: GO:0042280 - cell surface antigen activity, host-interacting; GO_process: GO:0009244 - lipopolysaccharide core region biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC76656.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002201
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016757 glycosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002201
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002201
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001365 rfaQ CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000872 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001120 rfaQ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001105 rfaQ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001261 rfaQ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000878 waaQ CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004452 rfaQ CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004112 rfaQ CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000145 rfaQ CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009122 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017695 rfaQ CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004088 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296221 CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000082 waaQ CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001538 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004668 rfaQ CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003769 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007437 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003686 rfaQ CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000548 rfaQ CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005408 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008107 rfaQ pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080633 rfaQ CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004405 rfaQ CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008928 rfaQ CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007443 rfaQ CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004124 rfaQ CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008565 rfaQ CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005556 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008333 rfaQ CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006847 rfaQ CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006398 rfaQ CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006858 rfaQ CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009836 rfaQ CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005111 rfaQ CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007649 rfaQ CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005434 rfaQ CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005500 rfaQ CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005342 rfaQ CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005228 rfaQ CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028701 CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005321 rfaQ CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008529 rfaQ CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004232 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003386 rfaQ CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003732 rfaQ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004403 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004433 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004234 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004165 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178311 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003984 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003964 rfaQ CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134581 rfaQ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002882 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004184 rfaQ CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000833 rfaQ CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004544 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060362 rfaQ CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003640 waaQ CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003442 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003015 rfaQ CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009396 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147859 rfaQ CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008107 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004109 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004261 rfaQ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008356 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011664 rfaQ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011321 rfaQ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005139 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008406 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005755 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006048 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006958 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007503 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008358 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006488 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003611 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003574 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004639 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008528 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004463 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007990 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004797 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113538 rfaQ CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085521 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004490 rfaQ CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101510 rfaQ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005485 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004913 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008404 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0268338 CDS
Person Approved Go view Shigella boydii 227 ADV-0003965 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009477 rfaQ CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003209 rfaQ CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004578 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075374 rfaQ CDS
Person Approved Go view Shigella flexneri 301 ABT-0089891 CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004145 waaQ CDS
Person Approved Go view Shigella sonnei 046 ADD-0004115 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000218 rfaQ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000012 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001611 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003254 rfaQ_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002195 rfaQ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002843 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243370 rfaQ CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004957 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004618 rfaQ CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005834 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002899 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116722 rfaQ CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005298 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007570 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003932 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005713 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007323 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033547 rfaQ CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004708 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000365 rfaQ CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003850 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006834 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007534 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000594 rfaQ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000683 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004328 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3802064 to 3813098
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011860waaOCDScomplement38020393803058Downstream
ABE-0011862waaBCDScomplement38030583804137Downstream
ABE-0011864waaSCDScomplement38041813805116Downstream
ABE-0011866waaPCDScomplement38051533805950Downstream
ABE-0011868waaGCDScomplement38059433807067Overlaps Downstream
ABE-0011870waaQCDScomplement38070643808098Matches
ABE-0285791rirAncRNAcomplement38081663808238Upstream
ABE-0011873waaACDSforward38085403809817Upstream
ABE-0011875coaDCDSforward38098253810304Upstream
ABE-0285626repeat_regionforward38103123810333Upstream
ABE-0011877mutMCDScomplement38103433811152Upstream
ABE-0011883rpmGCDScomplement38112503811417Upstream
ABE-0011885rpmBCDScomplement38114383811674Upstream
ABE-0011889yicRCDScomplement38118913812559Upstream
ABE-0011896dfpCDSforward38127313813951Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.