Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011875 (coaD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011875 showshow history
Names
coaD coaA yicA JW3609 ECK3624 kdtB b3634
Product
phosphopantetheine adenylyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3809825 3810304 480 160
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001367
EnteroFam0011875: Trusted threshold=411.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR014729 (IPR014729 Rossmann-like alpha/beta/alpha sandwich fold) Apr 2008
Automated Process Approved IPR004821 (IPR004821 Cytidyltransferase-like domain) Apr 2008
Automated Process Approved IPR001980 (IPR001980 Phosphopantetheine adenylyltransferase) Apr 2008
Automated Process Approved IPR004820 (IPR004820 (DEPRECATED) Cytidylyltransferase) Apr 2008
Automated Process Approved PF01467 (PF01467 Cytidylyltransferase-like) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0015937 coenzyme A biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001980
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004821
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016779 nucleotidyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004820
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004595 pantetheine-phosphate adenylyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001980
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004821
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name coaD Experimental - PubMed ID: 10480925
Reference: Escherichia coli 		Aug 2002
Person Approved synonym kdtB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW3609 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym coaA Published Annotation - GenBank Accession Number: BX936398
Reference: Yersinia pseudotuberculosis IP32953 		Sep 2007
Automated Process Approved synonym yicA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK3624 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3634 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product phosphopantetheine adenylyltransferase Experimental - PubMed ID: 10480925
Reference: Escherichia coli 		Jan 2006
Person Approved alternate product name pantetheine-phosphate adenylyltransferase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name CMP-deoxy-D-manno-octulosonate-lipid A transferase (phosphopantetheine adenylyltransferase) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0011875: Trusted threshold=411.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001367
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF01467 Cytidylyltransferase-like Protein Sequence Similarity - PFAM Model Name: PF01467
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Protein Sequence Similarity - InterPro Domain: IPR014729
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004821 Cytidyltransferase-like domain Protein Sequence Similarity - InterPro Domain: IPR004821
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004820 (DEPRECATED) Cytidylyltransferase Protein Sequence Similarity - InterPro Domain: IPR004820
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001980 Phosphopantetheine adenylyltransferase Protein Sequence Similarity - InterPro Domain: IPR001980
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.7.7.3 Published Annotation - Swiss-Prot Accession Number: P0A6I6 Feb 2006
Person Uncurated MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11190 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790065 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A6I6 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A6I6 Published Annotation - Swiss-Prot Accession Number: P0A6I6 Jan 2006
Automated Process Approved db xref ASAP:ABE-0011875 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947386 Published Annotation - Entrez Gene Database ID: 947386
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_function: GO:0042280 - cell surface antigen activity, host-interacting Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76658.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004821
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0015937 coenzyme A biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001980
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004821
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016779 nucleotidyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004820
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004595 pantetheine-phosphate adenylyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001980
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001367 coaD CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000273 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000362 coaD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000422 coaD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000430 coaD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000593 coaD CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001496 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003176 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129853 kdtB CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104700 coaD CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004450 coaD CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004114 coaD CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000142 coaD CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000647 coaD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009129 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017684 coaD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004096 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000405 coaD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296207 coaD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000148 kdtB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000075 coaD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001536 coaD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004666 coaD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003771 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007434 coaD CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0005378 CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000546 coaD CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005406 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010620 coaD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008109 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080635 coaD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004407 coaD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004990 coaD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008930 coaD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007445 coaD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004126 coaD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008567 coaD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005558 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008335 coaD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006849 coaD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006400 coaD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006856 coaD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009838 coaD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005109 coaD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007651 coaD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005436 coaD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005502 coaD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005344 coaD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005830 coaD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028704 coaD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005319 coaD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008531 coaD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004230 coaD CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003388 coaD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003730 coaD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004401 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004431 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004232 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004167 coaD CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003986 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003966 coaD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134583 coaD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002884 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004186 kdtB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003737 coaD CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000831 coaD CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004022 coaD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002530 coaD CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004537 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003062 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000068 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003190 coaD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000795 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0004015 coaD CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000138 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011635 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000698 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287140 coaD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006950 coaD CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060352 coaD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003650 coaD CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003439 KdtB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003006 coaD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009400 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147865 coaD CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000419 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008109 coaD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004106 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004263 coaD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008358 coaD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011669 kdtB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011316 kdtB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005137 coaD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008409 coaD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005758 coaD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006046 coaD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006960 coaD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007506 coaD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008360 coaD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006485 coaD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003613 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003576 coaD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004643 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008530 coaD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004461 coaD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007992 coaD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004799 coaD CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113534 coaD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085519 coaD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004493 coaD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101516 coaD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005482 coaD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004910 coaD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008407 coaD CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001024 coaD CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0268344 coaD CDS
Person Approved Go view Shigella boydii 227 ADV-0003967 coaD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009479 coaD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003211 coaD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004580 coaD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075369 coaD CDS
Person Approved Go view Shigella flexneri 301 ABT-0089895 coaD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004140 kdtB CDS
Person Approved Go view Shigella sonnei 046 ADD-0004113 coaD CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000238 VC0222 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000456 coaD CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000226 coaD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001324 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000210 coaD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003755 coaD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003842 coaD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001734 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234361 coaD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004163 coaD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004162 coaD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007793 coaD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003235 coaD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115507 coaD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007927 coaD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006268 coaD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001159 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005491 coaD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007961 coaD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029674 coaD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005086 coaD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004562 coaD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004627 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008418 coaD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0003992 coaD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000057 coaD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000057 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004928 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004893 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001092 coaD CDS
Molecular Interactions to toptop
Author Approval Feature Name Technique Evidence Comment Annotated
Person Approved ABE-0011875 coaD lambda repressor assay Doodle - bnumber: b3634 Oct 2003
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3804825 to 3815304
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011864waaSCDScomplement38041813805116Upstream
ABE-0011866waaPCDScomplement38051533805950Upstream
ABE-0011868waaGCDScomplement38059433807067Upstream
ABE-0011870waaQCDScomplement38070643808098Upstream
ABE-0285791rirAncRNAcomplement38081663808238Upstream
ABE-0011873waaACDSforward38085403809817Upstream
ABE-0011875coaDCDSforward38098253810304Matches
ABE-0285626repeat_regionforward38103123810333Downstream
ABE-0011877mutMCDScomplement38103433811152Downstream
ABE-0011883rpmGCDScomplement38112503811417Downstream
ABE-0011885rpmBCDScomplement38114383811674Downstream
ABE-0011889yicRCDScomplement38118913812559Downstream
ABE-0011896dfpCDSforward38127313813951Downstream
ABE-0011899dutCDSforward38139323814387Downstream
ABE-0011902slmACDSforward38144943815090Downstream
ABE-0285627repeat_regionforward38150973815118Downstream
ABE-0011904pyrECDScomplement38151273815768Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.