Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011904 (pyrE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011904 showshow history
Names
pyrE JW3617 ECK3632 b3642
Product
orotate phosphoribosyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3815127 3815768 642 214
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001375
EnteroFam0011904: Trusted threshold=609.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002375 (IPR002375 (DEPRECATED) Purine/pyrimidine phosphoribosyl transferase, conserved site) Apr 2008
Automated Process Approved IPR004467 (IPR004467 Orotate phosphoribosyl transferase domain) Apr 2008
Automated Process Approved IPR000836 (IPR000836 Phosphoribosyltransferase domain) Apr 2008
Automated Process Approved IPR029057 (IPR029057 Phosphoribosyltransferase-like) Jul 2018
Automated Process Approved PF00156 (PF00156 Phosphoribosyl transferase domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006221 pyrimidine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009116 nucleoside metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000836
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006221 pyrimidine nucleotide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004467
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004588 orotate phosphoribosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004467
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002375
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pyrE Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW3617 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3632 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3642 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product orotate phosphoribosyltransferase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name orotate phosphoribosyltransferase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0011904: Trusted threshold=609.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001375
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR002375 (DEPRECATED) Purine/pyrimidine phosphoribosyl transferase, conserved site Protein Sequence Similarity - InterPro Domain: IPR002375
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00156 Phosphoribosyl transferase domain Protein Sequence Similarity - PFAM Model Name: PF00156
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029057 Phosphoribosyltransferase-like Protein Sequence Similarity - InterPro Domain: IPR029057
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000836 Phosphoribosyltransferase domain Protein Sequence Similarity - InterPro Domain: IPR000836
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004467 Orotate phosphoribosyl transferase domain Protein Sequence Similarity - InterPro Domain: IPR004467
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.4.2.10 Published Annotation - Swiss-Prot Accession Number: P0A7E3 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.2.2 (metabolism; building block biosynthesis; nucleotide; pyrimidine biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790073 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A7E3 Published Annotation - Swiss-Prot Accession Number: P0A7E3 Jan 2006
Automated Process Approved db xref ASAP:ABE-0011904 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A7E3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10808 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948157 Published Annotation - Entrez Gene Database ID: 948157
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Pyrimidine ribonucleotide biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006221 - pyrimidine nucleotide biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76666.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006221 pyrimidine nucleotide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004467
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006221 pyrimidine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009116 nucleoside metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000836
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004588 orotate phosphoribosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004467
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002375
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001375 pyrE CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000265 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000384 pyrE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000482 pyrE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000432 pyrE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000430 pyrE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001505 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003167 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129829 pyrE CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105232 pyrE CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004442 pyrE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004122 pyrE CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000134 pyrE CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000639 pyrE CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009137 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019472 pyrE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004105 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000397 pyrE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296183 pyrE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000140 pyrE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000067 pyrE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001528 pyrE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004658 pyrE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003779 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007426 pyrE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003693 pyrE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000538 pyrE CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005398 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009922 pyrE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008117 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080643 pyrE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004982 pyrE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008938 pyrE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007453 pyrE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004136 pyrE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008575 pyrE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005566 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008343 pyrE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006857 pyrE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006408 pyrE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006848 pyrE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009846 pyrE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005101 pyrE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007659 pyrE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005444 pyrE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005510 pyrE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005352 pyrE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006347 pyrE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005838 pyrE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028712 pyrE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005311 pyrE_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008539 pyrE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004222 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003396 pyrE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003722 pyrE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004393 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004224 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004175 pyrE CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178324 pyrE CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003994 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003974 pyrE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134591 pyrE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002892 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004195 pyrE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003727 pyrE CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000823 pyrE CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004031 pyrE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002522 pyrE CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004527 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003070 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000076 pyrE CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003198 pyrE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000788 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0004023 pyrE CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000130 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011643 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000706 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287131 pyrE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006958 pyrE CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060342 pyrE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000097 pyrE CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000038 pyrE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002997 pyrE CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009410 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147891 pyrE CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000081 pyrE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008117 pyrE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004094 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004271 pyrE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008366 pyrE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011693 pyrE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011292 pyrE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005129 pyrE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008417 pyrE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005766 pyrE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006038 pyrE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007597 pyrE CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007514 pyrE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008368 pyrE CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006477 pyrE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003621 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003584 pyrE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004651 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008538 pyrE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004453 pyrE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008000 pyrE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004807 pyrE CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113514 pyrE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085511 pyrE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004501 pyrE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101537 pyrE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005474 pyrE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004902 pyrE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009242 pyrE CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001016 pyrE CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267903 pyrE CDS
Person Approved Go view Shigella boydii 227 ADV-0003975 pyrE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009487 pyrE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003219 pyrE CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004589 pyrE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075361 pyrE CDS
Person Approved Go view Shigella flexneri 301 ABT-0089903 pyrE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004133 pyrE CDS
Person Approved Go view Shigella sonnei 046 ADD-0004103 pyrE CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000227 VC0211 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000576 pyrE CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000261 pyrE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000155 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000188 pyrE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003747 pyrE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003443 pyrE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000712 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234352 pyrE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004155 pyrE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004170 pyrE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007801 pyrE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003243 pyrE CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115486 pyrE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007935 pyrE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006276 pyrE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002664 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005499 pyrE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007953 pyrE CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029682 pyrE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005094 pyrE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004570 pyrE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004635 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008410 pyrE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0003984 pyrE CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000049 pyrE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000049 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004936 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004922 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001084 pyrE CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21359mutantTn5 InsertionRequest the StrainABE-0011904pyrEpyrE::Tn5KAN-I-SceI at position 349 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3810127 to 3820768
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011875coaDCDSforward38098253810304Downstream
ABE-0285626repeat_regionforward38103123810333Downstream
ABE-0011877mutMCDScomplement38103433811152Downstream
ABE-0011883rpmGCDScomplement38112503811417Downstream
ABE-0011885rpmBCDScomplement38114383811674Downstream
ABE-0011889yicRCDScomplement38118913812559Downstream
ABE-0011896dfpCDSforward38127313813951Downstream
ABE-0011899dutCDSforward38139323814387Downstream
ABE-0011902slmACDSforward38144943815090Downstream
ABE-0285627repeat_regionforward38150973815118Downstream
ABE-0011904pyrECDScomplement38151273815768Matches
ABE-0011909rphpseudogenecomplement38158343816549Upstream
ABE-0011913yicCCDSforward38166763817539Upstream
ABE-0011918dinDCDSforward38177603818584Upstream
ABE-0011921yicGCDSforward38188743819491Upstream
ABE-0011923ligBCDScomplement38194883821170Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.