Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011946 (xanP) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011946 showshow history
Names
xanP JW3629 ECK3644 yicE b3654
Product
xanthine permease
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3828945 3830336 1392 464
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006043 (IPR006043 Xanthine/uracil/vitamin C permease) Apr 2008
Automated Process Approved IPR006042 (IPR006042 Xanthine/uracil permease) Apr 2008
Automated Process Approved PF00860 (PF00860 Permease family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006043
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006043, IPR006042
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006043
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006043
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006043
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name xanP Published Annotation in EcoGene - EG Number: EG11194
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Approved synonym JW3629 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3644 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yicE Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b3654 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product xanthine permease Experimental - PubMed ID: 16096267
Reference: Escherichia coli K-12 		Mar 2009
Person Uncurated alternate product name putative purine/xanthine transport protein (NCS2 family) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR006042 Xanthine/uracil permease Protein Sequence Similarity - InterPro Domain: IPR006042
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006043 Xanthine/uracil/vitamin C permease Protein Sequence Similarity - InterPro Domain: IPR006043
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00860 Permease family Protein Sequence Similarity - PFAM Model Name: PF00860
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.162 (transport; substrate; purine/xanthine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.40 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Nucleobase:Cation Symporter-2 (NCS2) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11194 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011946 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AGM9 Published Annotation - Swiss-Prot Accession Number: P0AGM9 Jan 2006
Automated Process Approved db xref GeneID:948172 Published Annotation - Entrez Gene Database ID: 948172
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1790087 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AGM9 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function transport; Transport of small molecules: Nucleosides, purines, pyrimidines Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note putative transport protein; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76678.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006043
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006043, IPR006042
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006043
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006043
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006043
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000344 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000129 xanP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001085 xanP CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001926 xanP CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000158 xanP CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001903 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003521 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004431 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004135 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000123 xanP CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000628 xanP CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009369 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0016321 xanP CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000020 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000386 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296100 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000122 yicE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000043 yicE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001496 yicE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004644 yicE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003791 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007412 yicE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003705 yicE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000525 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005385 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009906 yicE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008131 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080656 xanP CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004449 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004967 yicE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008952 yicE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007468 yicE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004164 yicE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008589 yicE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005581 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008357 yicE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006872 yicE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006422 yicE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006833 yicE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009861 yicE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005087 yicE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007674 yicE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005459 yicE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005525 yicE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005390 yicE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006386 yicE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005852 yicE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028726 yicE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005298 xanP CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008552 yicE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004210 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003406 yicE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003710 yicE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004380 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004408 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004211 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004188 CDS
Person Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0179649 pseudogene
Automated Process Approved Go view Escherichia coli SE11 AFS-0004009 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003986 yicE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134604 yicE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002930 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004208 yicE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003714 xanP CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000807 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004061 yicE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002510 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0009092 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003086 CDS
Automated Process Approved Go view Pantoea agglomerans SL1-M5 ALY-0000093 CDS
Automated Process Approved Go view Pantoea ananatis AJ13355 AOV-0003217 yicE CDS
Automated Process Approved Go view Pantoea ananatis B1-9 APL-0000770 CDS
Automated Process Approved Go view Pantoea ananatis LMG 20103 AKB-0004056 yicE CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000113 CDS
Automated Process Approved Go view Pantoea sp. At-9b AGM-0011664 CDS
Automated Process Approved Go view Pantoea sp. aB AJV-0000725 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0286273 CDS
Automated Process Approved Go view Pantoea vagans C9-1 ALK-0006974 yicE CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060237 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000019 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000011 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000143 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009538 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000785 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008131 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004079 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004286 yicE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008379 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011742 yicE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011243 yicE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005116 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008431 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005781 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006023 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007611 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007528 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008382 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006461 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003634 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003597 yicE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004667 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008553 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004438 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008022 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004829 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113483 CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085498 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004519 yicE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101578 yicE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005458 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004886 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006545 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001003 CDS
Person Approved Go view Shigella boydii 227 ADV-0004062 yicE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009523 yicE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003233 yicE CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004602 yicE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075349 yicE CDS
Person Approved Go view Shigella flexneri 301 ABT-0089916 yicE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004120 yicE CDS
Person Approved Go view Shigella sonnei 046 ADD-0004090 yicE CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002811 VC2712 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0008107 yicE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003613 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000131 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003724 xanP CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003424 yicE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001773 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234310 yicE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004143 yicE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004183 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007813 yicE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003254 yicE CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115432 yicE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007947 yicE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006287 yicE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002652 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005510 yicE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007941 yicE CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029693 yicE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005105 yicE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004583 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004648 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008399 yicE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0003961 yicE CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000038 yicE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000035 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004961 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005535 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000726 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3823945 to 3835336
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011935spoTCDSforward38224003824508Upstream
ABE-0011937trmHCDSforward38245153825204Upstream
ABE-0011939recGCDSforward38252103827291Upstream
ABE-0285628repeat_regionforward38273383827416Upstream
ABE-0011941gltSCDScomplement38274603828665Upstream
ABE-0011946xanPCDSforward38289453830336Matches
ABE-0011949yicHCDSforward38304573832166Downstream
ABE-0285629repeat_regionforward38321783832204Downstream
ABE-0011951yicICDScomplement38322193834537Downstream
ABE-0011953yicJCDScomplement38345473835929Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.