Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011981 (uhpT) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011981 showshow history
Names
uhpT JW3641 ECK3657 b3666
Product
hexose phosphate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3845776 3847167 1392 464
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR007114 (IPR007114 (DEPRECATED) Major facilitator superfamily) Apr 2008
Automated Process Approved IPR000849 (IPR000849 Sugar phosphate transporter) Apr 2008
Automated Process Approved IPR011701 (IPR011701 Major facilitator superfamily) Apr 2008
Automated Process Approved IPR036259 (IPR036259 MFS transporter superfamily) Jul 2018
Automated Process Approved PF07690 (PF07690 Major Facilitator Superfamily) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011701
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name uhpT Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW3641 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3657 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3666 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product hexose phosphate transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name hexose phosphate transport protein (MFS family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name hexose phosphate transport protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR011701 Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR011701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036259 MFS transporter superfamily Protein Sequence Similarity - InterPro Domain: IPR036259
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF07690 Major Facilitator Superfamily Protein Sequence Similarity - PFAM Model Name: PF07690
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR007114 (DEPRECATED) Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000849 Sugar phosphate transporter Protein Sequence Similarity - InterPro Domain: IPR000849
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.86 (transport; substrate; hexose phosphate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.1 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Major Facilitator Superfamily (MFS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11054 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AGC0 Published Annotation - Swiss-Prot Accession Number: P0AGC0 Jan 2006
Automated Process Approved db xref GeneID:948201 Published Annotation - Entrez Gene Database ID: 948201
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:2367259 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011981 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AGC0 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note hexose phosphate transport protein; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76689.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011701
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003645 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002738 uhpT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002971 uhpT CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002789 uhpT CDS
Ortholog
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000141 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000042 uhpT CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000583 uhpT CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008588 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0019925 uhpT CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000591 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000318 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001562 uhpT CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004604 uhpT CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003911 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007393 uhpT CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003726 uhpT CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000503 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005353 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007710 uhpT CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005938 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080773 uhpT CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004505 uhpT CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004952 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007569 uhpT CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007484 uhpT CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004231 uhpT CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008605 uhpT CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008426 uhpT CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006939 uhpT CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006488 uhpT CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006766 uhpT CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009930 uhpT CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005020 uhpT CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007741 uhpT CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005528 uhpT CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005595 uhpT CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005459 uhpT CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006454 uhpT CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005934 uhpT CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028795 uhpT CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005257 uhpT CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008566 uhpT CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004186 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003417 uhpT CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003697 uhpT CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004365 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004393 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004196 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004230 uhpT CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178363 uhpT CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004022 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004028 uhpT CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134681 uhpT CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003002 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004231 uhpT CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004117 uhpT CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003625 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002108 uhpT CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003617 uhpT CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008180 uhpT CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004048 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004337 uhpT CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008421 uhpT CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011838 uhpT CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011161 uhpT CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005076 uhpT CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008476 uhpT CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005826 uhpT CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005974 uhpT CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007652 uhpT CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007570 uhpT CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008423 uhpT CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006428 uhpT CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004727 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008596 uhpT CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004391 uhpT CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008065 uhpT CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004873 uhpT CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113417 uhpT CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085457 uhpT CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004574 uhpT CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101693 uhpT CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005419 uhpT CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004843 uhpT CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006590 uhpT CDS
Person Approved Go view Shigella boydii 227 ADV-0004039 uhpT CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009669 uhpT CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003254 uhpT CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004669 uhpT CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075235 uhpT CDS
Person Approved Go view Shigella flexneri 301 ABT-0090011 uhpT CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004081 uhpT CDS
Person Approved Go view Shigella sonnei 046 ADD-0003951 uhpT CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003468 uhpT CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005115 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001041 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3840776 to 3852167
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011967nepICDScomplement38405493841739Downstream
ABE-0285630repeat_regionforward38418763841944Downstream
ABE-0011972yicNCDScomplement38419503842402Downstream
ABE-0011975adeQCDScomplement38424553843789Downstream
ABE-0011979adeDCDSforward38439643845730Downstream
ABE-0285842uhpUncRNAcomplement38457303845995Overlaps Downstream
ABE-0011981uhpTCDScomplement38457763847167Matches
ABE-0011990uhpCCDScomplement38473053848624Upstream
ABE-0011993uhpBCDScomplement38486343850136Upstream
ABE-0011995uhpACDScomplement38501363850726Upstream
ABE-0011997ilvNCDScomplement38508023851092Upstream
ABE-0011999ilvBCDScomplement38510963852784Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.