Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011999 (ilvB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011999 showshow history
Names
ilvB JW3646 ECK3662 b3671
Product
acetohydroxy acid synthase I subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3851096 3852784 1689 563
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012846 (IPR012846 Acetolactate synthase, large subunit, biosynthetic) Apr 2008
Automated Process Approved IPR011766 (IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding) Apr 2008
Automated Process Approved IPR012000 (IPR012000 Thiamine pyrophosphate enzyme, central domain) Apr 2008
Automated Process Approved IPR000399 (IPR000399 TPP-binding enzyme, conserved site) Apr 2008
Automated Process Approved IPR012001 (IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain) Apr 2008
Automated Process Approved IPR029061 (IPR029061 Thiamin diphosphate-binding fold) Jul 2018
Automated Process Approved IPR029035 (IPR029035 DHS-like NAD/FAD-binding domain superfamily) Jul 2018
Automated Process Approved PF02775 (PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain) Jul 2018
Automated Process Approved PF00205 (PF00205 Thiamine pyrophosphate enzyme, central domain) Jul 2018
Automated Process Approved PF02776 (PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009082 branched-chain amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012846
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011766
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000399
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012846
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030976 thiamine pyrophosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012846
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012846
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003984 acetolactate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012846
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ilvB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK3662 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3646 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3671 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product acetohydroxy acid synthase I subunit Published Annotation - EcoCyc Accession Number: EG10494
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name acetolactate synthase I, large subunit, valine-sensitive Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name acetolactate synthase I, large subunit Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name acetolactate synthase I,valine-sensitive, large subunit Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding Protein Sequence Similarity - InterPro Domain: IPR011766
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012846 Acetolactate synthase, large subunit, biosynthetic Protein Sequence Similarity - InterPro Domain: IPR012846
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012000 Thiamine pyrophosphate enzyme, central domain Protein Sequence Similarity - InterPro Domain: IPR012000
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000399 TPP-binding enzyme, conserved site Protein Sequence Similarity - InterPro Domain: IPR000399
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain Protein Sequence Similarity - InterPro Domain: IPR012001
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR029061 Thiamin diphosphate-binding fold Protein Sequence Similarity - InterPro Domain: IPR029061
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029035 DHS-like NAD/FAD-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR029035
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00205 Thiamine pyrophosphate enzyme, central domain Protein Sequence Similarity - PFAM Model Name: PF00205
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Protein Sequence Similarity - PFAM Model Name: PF02776
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Protein Sequence Similarity - PFAM Model Name: PF02775
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.2.1.6 Published Annotation - Swiss-Prot Accession Number: P08142 Feb 2006
Person Uncurated MultiFun 1.5.1.18 (metabolism; building block biosynthesis; amino acids; isoleucine/valine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P08142 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790104 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P08142 Published Annotation - Swiss-Prot Accession Number: P08142 Jan 2005
Automated Process Approved db xref EcoGene:EG10494 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948182 Published Annotation - Entrez Gene Database ID: 948182
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0011999 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Isoleucine, Valine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note acetolactate synthase I,valine-sensitive, large subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76694.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009082 branched-chain amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012846
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003984 acetolactate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012846
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030976 thiamine pyrophosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012846
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012846
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011766
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000399
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012846
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001690 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002236 ilvB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002316 ilvB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002369 ilvB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002425 ilvB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003123 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003747 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001126 ilvB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003139 ilvB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000033 ilvB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000578 ilvB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005070 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0016689 ilvB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003652 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000313 ilvB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001567 ilvB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004599 ilvB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003917 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007388 ilvB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003731 ilvB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000498 ilvB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005347 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007705 ilvB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005933 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080779 ilvB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004510 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004947 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007574 ilvB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007489 ilvB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004236 ilvB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008611 ilvB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005659 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008434 ilvB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006947 ilvB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006496 ilvB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006758 ilvB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009938 ilvB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005012 ilvB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007749 ilvB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005536 ilvB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005603 ilvB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005467 ilvB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006462 ilvB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005942 ilvB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028805 ilvB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005251 ilvB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008571 ilvB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004181 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003422 ilvB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003692 ilvB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004360 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004388 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004191 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004236 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178368 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004027 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004035 ilvB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134690 ilvB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003011 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004236 ilvB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004122 ilvB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002475 ilvB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005074 CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064165 ilvB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002234 ilvB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002171 ilvB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002221 ilvB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008827 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008189 ilvB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004039 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004346 ilvB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008430 ilvB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011873 ilvB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011129 ilvB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005067 ilvB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008485 ilvB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005835 ilvB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005965 ilvB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007661 ilvB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007579 ilvB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008432 ilvB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006419 ilvB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003684 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003645 ilvB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004737 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008605 ilvB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004382 ilvB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008074 ilvB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004882 ilvB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113397 ilvB CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085448 ilvB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004583 ilvB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101723 ilvB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005410 ilvB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004834 ilvB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006599 ilvB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000130 ilvB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267999 ilvG CDS
Person Approved Go view Shigella boydii 227 ADV-0004034 ilvB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009664 ilvB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003259 ilvB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004679 ilvB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075240 ilvB CDS
Person Uncurated Go view Shigella flexneri 301 ABT-0090006 ilvB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004076 ilvB CDS
Person Approved Go view Shigella sonnei 046 ADD-0003956 ilvB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000032 VC0031 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006054 ilvB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001005 ilvB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000653 ilvB CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239270 ilvB2 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001982 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004783 ilvB2 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001165 CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122892 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007075 ilvB2 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007507 ilvB2 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007972 ilvB2 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005942 ilvB2 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031833 ilvB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008161 ilvB2 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002112 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001013 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007080 ilvB2 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005810 ilvB2 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002300 ilvB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002727 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002305 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005146 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001036 ilvB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21383mutantTn5 InsertionRequest the StrainABE-0011999ilvBilvB::Tn5KAN-I-SceI at position 88 in Plus orientation ,- pKD465Blattner Laboratory
FB21384mutantTn5 InsertionRequest the StrainABE-0011999ilvBilvB::Tn5KAN-I-SceI at position 88 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3846096 to 3857784
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011981uhpTCDScomplement38457763847167Downstream
ABE-0011990uhpCCDScomplement38473053848624Downstream
ABE-0011993uhpBCDScomplement38486343850136Downstream
ABE-0011995uhpACDScomplement38501363850726Downstream
ABE-0011997ilvNCDScomplement38508023851092Downstream
ABE-0011999ilvBCDScomplement38510963852784Matches
ABE-0012002ivbLCDScomplement38528903852988Upstream
ABE-0285197istRncRNAcomplement38531183853257Upstream
ABE-0285198tisBCDSforward38535533853642Upstream
ABE-0285631repeat_regionforward38537123853747Upstream
ABE-0285810ysdECDScomplement38537663853840Upstream
ABE-0012011emrDCDSforward38539223855106Upstream
ABE-0012013yidFCDScomplement38551143855611Upstream
ABE-0012015yidGCDScomplement38556083855970Upstream
ABE-0012018yidHCDScomplement38559603856307Upstream
ABE-0012022yidICDSforward38564153856864Upstream
ABE-0012024yidJCDScomplement38569113858404Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.