Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012072 (dgoT) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012072 showshow history
Names
dgoT yidT JW5859 ECK3683 b3691
Product
D-galactonate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3870438 3871730 1293 431
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR007114 (IPR007114 (DEPRECATED) Major facilitator superfamily) Apr 2008
Automated Process Approved IPR000849 (IPR000849 Sugar phosphate transporter) Apr 2008
Automated Process Approved IPR004744 (IPR004744 (DEPRECATED) D-galactonate transporter) Apr 2008
Automated Process Approved IPR011701 (IPR011701 Major facilitator superfamily) Apr 2008
Automated Process Approved IPR036259 (IPR036259 MFS transporter superfamily) Jul 2018
Automated Process Approved PF07690 (PF07690 Major Facilitator Superfamily) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011701, IPR004744
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004744
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dgoT Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK3683 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yidT Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW5859 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3691 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product D-galactonate transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name D-galactonate transport protein (MFS family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name D-galactonate transport Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR007114 (DEPRECATED) Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000849 Sugar phosphate transporter Protein Sequence Similarity - InterPro Domain: IPR000849
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF07690 Major Facilitator Superfamily Protein Sequence Similarity - PFAM Model Name: PF07690
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004744 (DEPRECATED) D-galactonate transporter Protein Sequence Similarity - InterPro Domain: IPR004744
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036259 MFS transporter superfamily Protein Sequence Similarity - InterPro Domain: IPR036259
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011701 Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR011701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 4.2.A.1 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Major Facilitator Superfamily (MFS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.43 (transport; substrate; D-galactonate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948196 Published Annotation - Entrez Gene Database ID: 948196
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AA76 Published Annotation - Swiss-Prot Accession Number: P0AA76 Jan 2006
Automated Process Approved db xref GI:87082320 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AA76 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012072 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11715 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note D-galactonate transport; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76714.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011701, IPR004744
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004744
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003505 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003393 dgoT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003026 dgoT CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003512 gudP CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003200 dgoT CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001588 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000769 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004337 dgoT CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000011 dgoT_1 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000290 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004578 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003931 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007368 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003746 dgoT CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000482 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005329 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007684 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005909 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080796 dgoT CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004531 dgoT CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004925 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007596 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007509 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004251 dgoT CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008631 CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005235 dgoT CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008589 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004166 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003441 dgoT CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003671 dgoT CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004335 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004363 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004167 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004252 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178384 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004049 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004053 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004251 dgoT CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000782 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004142 dgoT CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003512 CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064753 dgoT CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002620 dgoT CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000797 dgoT CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002224 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004378 dgoT CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008463 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012000 dgoT CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011016 dgoT CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005032 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008518 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005868 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008466 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006386 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003714 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003676 dgoT CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004783 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008639 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004349 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004625 dgoT CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101823 dgoT CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005376 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004798 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006634 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075261 dgoT CDS
Person Approved Go view Shigella flexneri 301 ABT-0256139 dgoT CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004058 dgoT CDS
Person Approved Go view Shigella sonnei 046 ADD-0003973 dgoT CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002079 exuT_1 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005188 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001025 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3865438 to 3876730
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012051yidECDScomplement38646123866273Downstream
ABE-0012054ibpBCDScomplement38664693866897Downstream
ABE-0012058ibpACDScomplement38670093867422Downstream
ABE-0012063yidQCDSforward38677283868060Downstream
ABE-0012065yidRCDScomplement38680623869276Downstream
ABE-0012068cbrACDSforward38693773870441Overlaps Downstream
ABE-0012072dgoTCDScomplement38704383871730Matches
ABE-0174106dgoDCDScomplement38718503872998Upstream
ABE-0174107dgoACDScomplement38729953873612Upstream
ABE-0012076dgoKCDScomplement38735963874474Upstream
ABE-0174108dgoRCDScomplement38744713875160Upstream
ABE-0012084yidXCDSforward38754383876094Upstream
ABE-0012086yidACDScomplement38761403876952Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.