Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012086 (yidA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012086 showshow history
Names
yidA JW3674 ECK3689 b3697
Product
erythrose 4-P/mannose 1-P/alpha-D-glucose-1-P phosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3876140 3876952 813 271
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001391
EnteroFam0012086: Trusted threshold=673.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000150 (IPR000150 Cof family) Apr 2008
Automated Process Approved IPR006379 (IPR006379 HAD-superfamily hydrolase, subfamily IIB) Apr 2008
Automated Process Approved IPR013200 (IPR013200 (DEPRECATED) HAD superfamily hydrolase-like, type 3) Apr 2008
Automated Process Approved IPR036412 (IPR036412 HAD-like superfamily) Jul 2018
Automated Process Approved PF08282 (PF08282 haloacid dehalogenase-like hydrolase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000150
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006379
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000150
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name yidA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW3674 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3689 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3697 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product erythrose 4-P/mannose 1-P/alpha-D-glucose-1-P phosphatase Experimental - PubMed ID: 16990279
Reference: Escherichia coli K-12 DH5-alpha 		Jan 2022
Person Approved alternate product name predicted hydrolase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name conserved protein, phophatase-like domain Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name sugar phosphate phosphatase; substrates include erythrose 4-P and mannose 1-P phosphatase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0012086: Trusted threshold=673.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001391
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR013200 (DEPRECATED) HAD superfamily hydrolase-like, type 3 Protein Sequence Similarity - InterPro Domain: IPR013200
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036412 HAD-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036412
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000150 Cof family Protein Sequence Similarity - InterPro Domain: IPR000150
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006379 HAD-superfamily hydrolase, subfamily IIB Protein Sequence Similarity - InterPro Domain: IPR006379
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF08282 haloacid dehalogenase-like hydrolase Protein Sequence Similarity - PFAM Model Name: PF08282
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 3.-.-.- Published Annotation - Database Name: EC2GO: GO:0016787
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 3.1.3.- Published Annotation - Swiss-Prot Accession Number: P0A8Y5 Feb 2006
Automated Process Approved EC number 3.1.3.10 Experimental - PubMed ID: 16990279
Reference: Escherichia coli DH5alpha 		Sep 2007
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A8Y5 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012086 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A8Y5 Published Annotation - Swiss-Prot Accession Number: P0A8Y5 Jan 2006
Automated Process Approved db xref GeneID:948204 Published Annotation - Entrez Gene Database ID: 948204
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:2367265 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11195 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76720.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000150
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000150
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006379
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001391 yidA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000494 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001461 yidA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001367 yidA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002009 yidA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001493 yidA CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004342 yidA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004305 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000006 yidA_1 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000553 yidA_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009318 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018382 yidA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000052 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000285 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0307074 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003904 yidA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003558 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001588 yidA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004572 yidA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003937 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007362 yidA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003752 yidA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000476 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005322 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007678 yidA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005903 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080803 yidA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004537 yidA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004919 yidA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007602 yidA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007515 yidA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004259 yidA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008637 yidA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005683 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008455 yidA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006969 yidA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006517 yidA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006737 yidA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009959 yidA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0004991 yidA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007771 yidA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005557 yidA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005625 yidA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005489 yidA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006483 yidA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005964 yidA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028826 yidA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005229 yidA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008595 yidA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004160 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003444 yidA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003665 yidA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004329 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004357 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004161 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004258 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178390 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004055 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004059 yidA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134710 yidA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003034 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004256 yidA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003646 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004149 yidA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002460 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0009057 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003172 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003362 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003323 yidA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000661 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000087 yidA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000006 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007779 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003517 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286311 yidA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007062 yidA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064766 yidA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002621 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002293 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000811 yidA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004441 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008227 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003997 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004383 yidA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008468 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012017 yidA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011000 yidA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005027 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008523 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005873 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005928 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007698 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007616 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008471 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006381 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004788 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008644 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004344 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008111 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004920 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113326 yidA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085414 yidA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004630 yidA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101835 yidA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005371 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004793 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006639 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000928 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003293 yidA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004706 yidA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075267 yidA CDS
Person Approved Go view Shigella flexneri 301 ABT-0089986 yidA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004053 yidA CDS
Person Approved Go view Shigella sonnei 046 ADD-0003978 yidA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0004158 yidA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001436 VC1364 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001568 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0012015 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002409 yidA_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003573 yidA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001892 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243898 yidA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008300 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004936 yidA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007205 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003322 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0129107 yidA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005769 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006372 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004143 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006205 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006651 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033910 yidA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008935 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004732 yidA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000006 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007882 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008188 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0004059 yidA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000006 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000006 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005216 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001016 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3871140 to 3881952
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012072dgoTCDScomplement38704383871730Downstream
ABE-0174106dgoDCDScomplement38718503872998Downstream
ABE-0174107dgoACDScomplement38729953873612Downstream
ABE-0012076dgoKCDScomplement38735963874474Downstream
ABE-0174108dgoRCDScomplement38744713875160Downstream
ABE-0012084yidXCDSforward38754383876094Downstream
ABE-0012086yidACDScomplement38761403876952Matches
ABE-0012089yidBCDScomplement38770673877465Upstream
ABE-0285632repeat_regionforward38775863877683Upstream
ABE-0012093gyrBCDScomplement38777053880119Upstream
ABE-0012095recFCDScomplement38801483881221Upstream
ABE-0012098dnaNCDScomplement38812213882321Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.