Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012135 (tnaB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012135 showshow history
Names
tnaB JW5622 tnaP JW5619 ECK3702 trpP b3709
Product
tryptophan:H+ symporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3890236 3891483 1248 416
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002091 (IPR002091 (DEPRECATED) Aromatic amino acid permease) Apr 2008
Automated Process Approved IPR013059 (IPR013059 Tryptophan/tyrosine transporter) Apr 2008
Automated Process Approved IPR013061 (IPR013061 Tryptophan/tryrosine permease, conserved site) Apr 2008
Automated Process Approved IPR018227 (IPR018227 Amino acid/polyamine transporter 2) Jul 2018
Automated Process Approved PF03222 (PF03222 Tryptophan/tyrosine permease family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0000162 tryptophan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0015801 aromatic amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013059
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0003333 amino acid transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR018227
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002091
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005887 integral component of plasma membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013059
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002091
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0015173 aromatic amino acid transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013059
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005279 (DEPRECATED) amino acid-polyamine transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002091
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name tnaB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK3702 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5619 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5622 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym tnaP Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym trpP Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b3709 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product tryptophan:H+ symporter Published Annotation - EcoCyc Accession Number: EG11006
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name tryptophan transporter of low affinity Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name low affinity tryptophan permease Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name low-affinity tryptophan permease (HAAAP family) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR013061 Tryptophan/tryrosine permease, conserved site Protein Sequence Similarity - InterPro Domain: IPR013061
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF03222 Tryptophan/tyrosine permease family Protein Sequence Similarity - PFAM Model Name: PF03222
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR018227 Amino acid/polyamine transporter 2 Protein Sequence Similarity - InterPro Domain: IPR018227
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013059 Tryptophan/tyrosine transporter Protein Sequence Similarity - InterPro Domain: IPR013059
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002091 (DEPRECATED) Aromatic amino acid permease Protein Sequence Similarity - InterPro Domain: IPR002091
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 1.5.1.15 (metabolism; building block biosynthesis; amino acids; tryptophan) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.42 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.183 (transport; substrate; tryptophan) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11006 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790145 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P23173 Published Annotation - Swiss-Prot Accession Number: P23173 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P23173 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948220 Published Annotation - Entrez Gene Database ID: 948220
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0012135 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Amino acids, amines Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note low affinity tryptophan permease; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0000162 - tryptophan biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76732.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0015801 aromatic amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013059
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0003333 amino acid transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR018227
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002091
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0000162 tryptophan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005887 integral component of plasma membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013059
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002091
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0015173 aromatic amino acid transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013059
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005279 (DEPRECATED) amino acid-polyamine transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002091
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003763 tnaB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004251 tnaB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003436 tnaB CDS
Ortholog
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004564 tnaB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001600 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004561 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003948 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007350 tnaB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003762 tnaB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000465 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010526 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007667 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005890 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080817 tnaB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004549 tnaB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004907 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007613 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007526 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004271 tnaB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008649 tnaB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005699 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008469 tnaB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006984 tnaB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006532 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006722 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009974 tnaB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0004976 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007786 tnaB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005571 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005639 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005503 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006498 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006855 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028842 tnaB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005218 tnaB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008609 tnaB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004147 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003454 tnaB CDS
Person Uncurated Go view Escherichia coli K-12 W3110 ADY-0003651 tnaB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004315 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004343 tnaB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004147 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004271 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178400 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004067 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134724 tnaB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003048 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004271 tnaB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002443 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003353 tnaB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000628 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000116 tnaB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004267 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286344 tnaB CDS
Person Approved Go view Shigella boydii 227 ADV-0003999 tnaB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009629 tnaB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003305 CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0004735 tnaB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075283 tnaB CDS
Person Approved Go view Shigella flexneri 301 ABT-0089972 tnaB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004042 tnaB CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004238 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3885236 to 3896483
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012120yidCCDSforward38850763886722Upstream
ABE-0285633repeat_regionforward38867783886806Upstream
ABE-0012123mnmECDSforward38868283888192Upstream
ABE-0012128tnaCCDSforward38884353888509Upstream
ABE-0012133tnaACDSforward38887303890145Upstream
ABE-0012135tnaBCDSforward38902363891483Matches
ABE-0012139mdtLCDSforward38916153892790Downstream
ABE-0012141yidZCDSforward38927653893724Downstream
ABE-0012144yieECDSforward38938813894630Downstream
ABE-0012146yieFCDSforward38946523895218Downstream
ABE-0012148adePCDScomplement38952723896609Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.