Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012153 (yieH) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012153 showshow history
Names
yieH JW3693 ECK3708 b3715
Product
phosphoenolpyruvate/6-phosphogluconate phosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3896774 3897439 666 222
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001398
EnteroFam0012153: Trusted threshold=539.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR005833 (IPR005833 (DEPRECATED) Haloacid dehalogenase/epoxide hydrolase) Apr 2008
Automated Process Approved IPR006439 (IPR006439 HAD hydrolase, subfamily IA) Apr 2008
Automated Process Approved IPR006402 (IPR006402 (DEPRECATED) HAD-superfamily hydrolase, subfamily IA, variant 3) Apr 2008
Automated Process Approved IPR005834 (IPR005834 (DEPRECATED) Haloacid dehalogenase-like hydrolase) Apr 2008
Automated Process Approved IPR036412 (IPR036412 HAD-like superfamily) Jul 2018
Automated Process Approved PF13419 (PF13419 Haloacid dehalogenase-like hydrolase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005833
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005833
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008967 phosphoglycolate phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name yieH Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3708 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3693 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3715 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product phosphoenolpyruvate/6-phosphogluconate phosphatase Experimental - PubMed ID: 16990279
Reference: Escherichia coli DH5alpha 		Oct 2021
Automated Process Approved alternate product name phosphoenolpyruvate and 6-phosphogluconate phosphatase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name predicted hydrolase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name putative phosphatase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name putative enzyme with a phophatase-like domain Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012153: Trusted threshold=539.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001398
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR006439 HAD hydrolase, subfamily IA Protein Sequence Similarity - InterPro Domain: IPR006439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006402 (DEPRECATED) HAD-superfamily hydrolase, subfamily IA, variant 3 Protein Sequence Similarity - InterPro Domain: IPR006402
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036412 HAD-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036412
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF13419 Haloacid dehalogenase-like hydrolase Protein Sequence Similarity - PFAM Model Name: PF13419
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005834 (DEPRECATED) Haloacid dehalogenase-like hydrolase Protein Sequence Similarity - InterPro Domain: IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005833 (DEPRECATED) Haloacid dehalogenase/epoxide hydrolase Protein Sequence Similarity - InterPro Domain: IPR005833
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 3.-.-.- Published Annotation - Database Name: EC2GO: GO:0016787
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 3.1.3.- Published Annotation - Swiss-Prot Accession Number: P31467 Feb 2006
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P31467 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790151 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948232 Published Annotation - Entrez Gene Database ID: 948232
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P31467 Published Annotation - Swiss-Prot Accession Number: P31467 Jan 2005
Automated Process Approved db xref EcoGene:EG11725 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012153 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function enzyme; Not classified Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note putative phosphatase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76738.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005833
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005833
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008967 phosphoglycolate phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001398 yieH CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002202 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002086 yieH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002130 yieH CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002243 yieH CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002123 yieH CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004360 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004291 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004555 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000539 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009450 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016267 yieH CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004279 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000270 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001607 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004555 yieH CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003954 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007344 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003769 yieH CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000459 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010520 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007661 yieH CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005884 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080823 yieH CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004555 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004901 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007619 yieH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007532 yieH CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004277 yieH CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008655 yieH CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005705 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008475 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006990 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006538 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006716 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009980 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0004970 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007792 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005577 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005645 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005509 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006504 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006861 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028848 yieH CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005212 yieH CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008615 yieH CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003460 yieH CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003640 yieH CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004309 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004337 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004141 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004277 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004073 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004079 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134730 yieH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003054 CDS
Person Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0005491 yieH pseudogene
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003664 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004173 yieH CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002437 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0009160 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003186 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003376 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003335 yieH CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000647 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000099 yieH CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004284 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011720 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003531 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286323 yieH CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007076 yieH CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064804 yieH CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002675 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001201 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001390 yieH CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009616 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008244 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003981 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004403 yieH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008485 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012083 yieH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010938 yieH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005010 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008541 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005891 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005911 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008672 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007633 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008488 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006359 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003731 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003692 yieH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004811 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008661 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004327 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008129 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113284 yieH CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085397 yieH CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004653 yieH CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101889 yieH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005310 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009340 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000944 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003311 CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0004729 yieH CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075292 yieH CDS
Person Approved Go view Shigella flexneri 301 ABT-0089965 yieH CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004033 yieH CDS
Person Approved Go view Shigella sonnei 046 ADD-0003875 yieH CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003691 VCA0798 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001583 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0012085 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002427 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002265 yieH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001910 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243935 yieH CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008315 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004952 yieH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007190 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003309 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0129161 yieH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005753 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006358 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003894 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009421 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006635 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033923 yieH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008920 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004748 yieH CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004718 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007895 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008201 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0004074 yieH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004990 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0005027 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005323 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000995 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21412mutantTn5 InsertionRequest the StrainABE-0012153yieHyieH::Tn5KAN-I-SceI at position 554 in Minus orientation ,+ pKD460Blattner Laboratory
FB21413mutantTn5 InsertionRequest the StrainABE-0012153yieHyieH::Tn5KAN-I-SceI at position 554 in Minus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3891774 to 3902439
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012139mdtLCDSforward38916153892790Upstream
ABE-0012141yidZCDSforward38927653893724Upstream
ABE-0012144yieECDSforward38938813894630Upstream
ABE-0012146yieFCDSforward38946523895218Upstream
ABE-0012148adePCDScomplement38952723896609Upstream
ABE-0012153yieHCDSforward38967743897439Matches
ABE-0012156cbrBCDSforward38975063897973Downstream
ABE-0012158cbrCCDSforward38980223898609Downstream
ABE-0285634repeat_regionforward38986313898656Downstream
ABE-0012160yieKCDScomplement38986713899393Downstream
ABE-0012163yieLCDScomplement38994083900577Downstream
ABE-0012165bglHCDScomplement39006043902220Downstream
ABE-0012169bglBCDScomplement39022893903701Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.