Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012169 (bglB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012169 showshow history
Names
bglB JW3699 ECK3714 blgA b3721
Product
cryptic phospho-beta-glucosidase B
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3902289 3903701 1413 471
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001360 (IPR001360 Glycoside hydrolase family 1) Apr 2008
Automated Process Approved IPR013781 (IPR013781 (DEPRECATED) Glycoside hydrolase, catalytic domain) Apr 2008
Automated Process Approved IPR017853 (IPR017853 Glycoside hydrolase superfamily) Jul 2018
Automated Process Approved PF00232 (PF00232 Glycosyl hydrolase family 1) Jul 2018
Automated Process Uncurated GH1 (GH1 Glycoside Hydrolase Family 1) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001360
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0043169 cation binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001360
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name bglB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym blgA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW3699 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3714 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3721 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product cryptic phospho-beta-glucosidase B Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name phospho-beta-glucosidase B; cryptic Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR001360 Glycoside hydrolase family 1 Protein Sequence Similarity - InterPro Domain: IPR001360
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated protein family GH1 Glycoside Hydrolase Family 1 Protein Sequence Similarity - CAZy Model Name: GH1
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013781 (DEPRECATED) Glycoside hydrolase, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR017853 Glycoside hydrolase superfamily Protein Sequence Similarity - InterPro Domain: IPR017853
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00232 Glycosyl hydrolase family 1 Protein Sequence Similarity - PFAM Model Name: PF00232
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 3.2.1.- Published Annotation - Database Name: EC2GO: GO:0004553
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 3.2.1.86 Published Annotation - Swiss-Prot Accession Number: P11988 Feb 2006
Person Uncurated MultiFun 10 (cryptic genes) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated comment A single nucleotide insertion in an adenosine septamer beginning within codon 462 relative to Escherichia coli E24377A (ETEC) (ASAP:ADO-0008661) results in a frameshift leading to a 6 amino acid C-terminal extension. Unpublished Sequence Analysis - Author Name, Email; Comment: Eric Neeno-Eckwall, ecneenoeckwa@wisc.edu
Reference: Escherichia coli K-12 MG1655 		Oct 2008
Automated Process Approved db xref ASAP:ABE-0012169 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:2367270 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10114 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948234 Published Annotation - Entrez Gene Database ID: 948234
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P11988 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P11988 Published Annotation - Swiss-Prot Accession Number: P11988 Jan 2005
Person Approved function enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note phospho-beta-glucosidase B; cryptic; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76744.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001360
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0043169 cation binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001360
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000047 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003734 bglB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003286 bglB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000015 ascB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000059 ascB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001343 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003027 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001354 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002896 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006424 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0020337 bglB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002427 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004548 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003959 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007338 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003774 bglB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000454 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010512 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007655 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005878 pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080828 bglB CDS
Person Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004132 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007633 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007539 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004282 bglB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008661 CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005206 bglB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008621 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003466 bglB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003634 bglB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004135 CDS
Person Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178412 pseudogene
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004079 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004281 bglB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001356 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003479 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002585 CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000918 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003971 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000952 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008175 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286502 bglB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0008242 bglB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000829 CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0075305 bglB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004021 bglB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000737 ascB_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001087 ascB_3 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21416mutantTn5 InsertionRequest the StrainABE-0012169bglBbglB::Tn5KAN-I-SceI at position 353 in Minus orientation ,+ pKD460Blattner Laboratory
FB21417mutantTn5 InsertionRequest the StrainABE-0012169bglBbglB::Tn5KAN-I-SceI at position 353 in Minus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3897289 to 3908701
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012153yieHCDSforward38967743897439Downstream
ABE-0012156cbrBCDSforward38975063897973Downstream
ABE-0012158cbrCCDSforward38980223898609Downstream
ABE-0285634repeat_regionforward38986313898656Downstream
ABE-0012160yieKCDScomplement38986713899393Downstream
ABE-0012163yieLCDScomplement38994083900577Downstream
ABE-0012165bglHCDScomplement39006043902220Downstream
ABE-0012169bglBCDScomplement39022893903701Matches
ABE-0012171bglFCDScomplement39037203905597Upstream
ABE-0012174bglGCDScomplement39057313906567Upstream
ABE-0012177phoUCDScomplement39068533907578Upstream
ABE-0012179pstBCDScomplement39075933908366Upstream
ABE-0285635repeat_regionforward39083873908450Upstream
ABE-0012184pstACDScomplement39085493909439Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.