Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012171 (bglF) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012171 showshow history
Names
bglF JW3700 bglS ECK3715 bglC bglB b3722
Product
PTS system beta-glucoside-specific EIIBCA component
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3903720 3905597 1878 626
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001996 (IPR001996 Phosphotransferase system, IIB component, type 1) Apr 2008
Automated Process Approved IPR003352 (IPR003352 Phosphotransferase system, EIIC) Apr 2008
Automated Process Approved IPR001127 (IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1) Apr 2008
Automated Process Approved IPR013013 (IPR013013 Phosphotransferase system, EIIC component, type 1) Apr 2008
Automated Process Approved IPR011297 (IPR011297 Phosphotransferase system, beta-glucoside-specific IIABC component) Apr 2008
Automated Process Approved IPR011535 (IPR011535 (DEPRECATED) Phosphotransferase system, glucose-like IIB component) Apr 2008
Automated Process Approved IPR004719 (IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component) Apr 2008
Automated Process Approved IPR011055 (IPR011055 Duplicated hybrid motif) Apr 2008
Automated Process Approved IPR018113 (IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site) Jul 2018
Automated Process Approved IPR036878 (IPR036878 Glucose permease domain IIB) Jul 2018
Automated Process Approved PF00358 (PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1) Jul 2018
Automated Process Approved PF00367 (PF00367 phosphotransferase system, EIIB) Jul 2018
Automated Process Approved PF02378 (PF02378 Phosphotransferase system, EIIC) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006464 cellular protein modification process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004719
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR018113, IPR003352, IPR004719, IPR001996, IPR011297, IPR036878
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name bglF Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym bglB Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym bglC Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK3715 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym bglS Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW3700 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3722 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product PTS system beta-glucoside-specific EIIBCA component Experimental - PubMed ID: 9882659
Reference: Escherichia coli K-12 		Mar 2008
Person Uncurated alternate product name PTS family enzyme IIBC (N-terminal); enzyme IIA (C-terminal), beta-glucoside-specific, cryptic Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name fused beta-glucoside-specific PTS enzymes: IIA component/IIB component/IIC component Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name PTS system beta-glucosides, enzyme II, cryptic Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR011055 Duplicated hybrid motif Protein Sequence Similarity - InterPro Domain: IPR011055
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 Protein Sequence Similarity - InterPro Domain: IPR001127
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003352 Phosphotransferase system, EIIC Protein Sequence Similarity - InterPro Domain: IPR003352
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001996 Phosphotransferase system, IIB component, type 1 Protein Sequence Similarity - InterPro Domain: IPR001996
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013013 Phosphotransferase system, EIIC component, type 1 Protein Sequence Similarity - InterPro Domain: IPR013013
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02378 Phosphotransferase system, EIIC Protein Sequence Similarity - PFAM Model Name: PF02378
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011535 (DEPRECATED) Phosphotransferase system, glucose-like IIB component Protein Sequence Similarity - InterPro Domain: IPR011535
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component Protein Sequence Similarity - InterPro Domain: IPR004719
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site Protein Sequence Similarity - InterPro Domain: IPR018113
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011297 Phosphotransferase system, beta-glucoside-specific IIABC component Protein Sequence Similarity - InterPro Domain: IPR011297
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00367 phosphotransferase system, EIIB Protein Sequence Similarity - PFAM Model Name: PF00367
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Protein Sequence Similarity - PFAM Model Name: PF00358
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036878 Glucose permease domain IIB Protein Sequence Similarity - InterPro Domain: IPR036878
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.1.69 Published Annotation - Swiss-Prot Accession Number: P08722 Feb 2006
Person Approved EC number 2.7.1.- Published Annotation - Swiss-Prot Accession Number: P08722 Feb 2006
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 10 (cryptic genes) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.22 (transport; substrate; beta-glucoside) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.4.A.1 (transport; Group Translocators; Phosphotransferase Systems (PEP-dependent PTS); The PTS Glucose-Glucoside (Glc) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 2.3.3 (information transfer; protein related; posttranslational modification) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 3.1.3.2 (regulation; type of regulation; posttranscriptional; covalent modification, demodification, maturation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012171 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790159 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P08722 Published Annotation - Swiss-Prot Accession Number: P08722 Jan 2005
Automated Process Approved db xref EcoGene:EG10115 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948236 Published Annotation - Entrez Gene Database ID: 948236
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P08722 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note PTS system beta-glucosides, enzyme II, cryptic; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0016052 - carbohydrate catabolic process; GO_process: GO:0006464 - protein modification process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76745.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006464 cellular protein modification process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004719
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR018113, IPR003352, IPR004719, IPR001996, IPR011297, IPR036878
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002110 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003399 bglF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002468 bglF CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002189 bglF CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002909 bglF CDS
Ortholog
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006423 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0020336 bglF CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002428 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004547 bglF CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003960 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007335 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003775 bglF CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000453 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010511 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007654 bglF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005877 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080829 bglF CDS
Person Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004133 bglF pseudogene
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004894 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007634 bglF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007540 bglF CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004283 bglF CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008662 bglF CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005205 bglF_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008622 bglF CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004136 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003467 bglF CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003633 bglF CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004302 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004330 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004134 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004283 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178413 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004080 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004282 bglF CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001355 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002586 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006343 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286503 bglF CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0008243 bglF CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062129 arbF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001014 arbF CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000480 arbF CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000975 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007419 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138092 bglF CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000830 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075306 bglF CDS
Person Approved Go view Shigella flexneri 301 ABT-0089955 bglF CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004020 bglF CDS
Person Approved Go view Shigella sonnei 046 ADD-0004262 bglF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001738 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006171 arbF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000738 arbF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001088 arbF_2 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001131 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3898720 to 3910597
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012160yieKCDScomplement38986713899393Downstream
ABE-0012163yieLCDScomplement38994083900577Downstream
ABE-0012165bglHCDScomplement39006043902220Downstream
ABE-0012169bglBCDScomplement39022893903701Downstream
ABE-0012171bglFCDScomplement39037203905597Matches
ABE-0012174bglGCDScomplement39057313906567Upstream
ABE-0012177phoUCDScomplement39068533907578Upstream
ABE-0012179pstBCDScomplement39075933908366Upstream
ABE-0285635repeat_regionforward39083873908450Upstream
ABE-0012184pstACDScomplement39085493909439Upstream
ABE-0012186pstCCDScomplement39094393910398Upstream
ABE-0285636repeat_regionforward39104433910477Upstream
ABE-0012190pstSCDScomplement39104853911525Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.