Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012186 (pstC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012186 showshow history
Names
pstC JW3705 ECK3720 phoW b3727
Product
membrane component of an ABC superfamily phosphate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3909439 3910398 960 320
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001402
EnteroFam0012186: Trusted threshold=900.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Apr 2008
Automated Process Approved IPR011864 (IPR011864 Phosphate ABC transporter, permease protein PstC) Apr 2008
Automated Process Approved IPR012338 (IPR012338 Beta-lactamase/transpeptidase-like) Apr 2008
Automated Process Approved IPR035906 (IPR035906 MetI-like superfamily) Jul 2018
Automated Process Approved PF00528 (PF00528 Binding-protein-dependent transport system inner membrane component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006793 phosphorus metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006817 phosphate ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011864
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011864
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005315 inorganic phosphate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011864
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pstC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym phoW Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK3720 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3705 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3727 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product membrane component of an ABC superfamily phosphate transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name high-affinity phosphate-specific transport system, cytoplasmic membrane component Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name high-affinity phosphate transport protein (ABC superfamily, membrane) Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name phosphate transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0012186: Trusted threshold=900.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001402
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00528 Binding-protein-dependent transport system inner membrane component Protein Sequence Similarity - PFAM Model Name: PF00528
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR035906 MetI-like superfamily Protein Sequence Similarity - InterPro Domain: IPR035906
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011864 Phosphate ABC transporter, permease protein PstC Protein Sequence Similarity - InterPro Domain: IPR011864
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012338 Beta-lactamase/transpeptidase-like Protein Sequence Similarity - InterPro Domain: IPR012338
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 3.-.-.- Protein Sequence Similarity - InterPro Domain: IPR012338
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Person Uncurated MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.155 (transport; substrate; phosphate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.8.1 (metabolism; metabolism of other compounds; phosphorous metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790164 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948238 Published Annotation - Entrez Gene Database ID: 948238
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AGH8 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012186 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AGH8 Published Annotation - Swiss-Prot Accession Number: P0AGH8 Jan 2006
Automated Process Approved db xref EcoGene:EG10784 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Anions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note high-affinity phosphate-specific transport system, cytoplasmic membrane component; membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0006793 - phosphorus metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76750.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006817 phosphate ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011864
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006793 phosphorus metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011864
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005315 inorganic phosphate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011864
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001402 pstC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000506 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001575 pstC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001310 pstC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000872 pstC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000814 pstC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000510 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000871 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004370 pstC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004185 pstC CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004551 pstC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000535 pstC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009442 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016277 pstC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004286 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000266 pstC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0307139 pstC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003924 pstC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003573 pstC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001612 pstC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004541 pstC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003965 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007326 pstC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003780 pstC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000448 pstC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010506 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007648 pstC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005871 PstC CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080837 pstC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004139 pstC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004888 pstC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007640 pstC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007545 pstC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004288 pstC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008669 pstC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005712 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008485 pstC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007000 pstC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006548 pstC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006706 pstC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009990 pstC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0004959 pstC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007803 pstC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005588 pstC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005655 pstC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005520 pstC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006515 pstC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006870 pstC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028857 pstC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005199 pstC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008628 pstC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004131 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003472 pstC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003628 pstC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004297 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004325 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004129 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004291 pstC CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004085 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004088 pstC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134741 pstC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003063 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004288 pstC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003668 pstC CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000755 pstC CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004180 pstC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002431 pstC CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0009152 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003137 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003326 pstC CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003273 pstC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000719 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000034 pstC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000058 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011715 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003476 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287084 pstC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007026 pstc3 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064813 pstC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002680 pstC CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003323 pstC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001401 pstC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009603 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137258 pstC CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003319 pstC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008248 pstC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003977 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004410 pstC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008489 pstC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012096 pstC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010923 pstC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008545 pstC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005907 pstC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007637 pstC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008492 pstC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006355 pstC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003735 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003696 pstC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004815 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008665 pstC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008133 pstC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113273 pstC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085393 pstC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004657 pstC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101899 pstC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005306 pstC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000951 pstC CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267939 pstC CDS
Person Approved Go view Shigella boydii 227 ADV-0003987 pstC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009617 pstC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003318 pstC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004537 pstC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075312 pstC CDS
Person Uncurated Go view Shigella flexneri 301 ABT-0089950 pstC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004015 pstC CDS
Person Approved Go view Shigella sonnei 046 ADD-0004257 pstC CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0004174 pstC CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007946 pstC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001591 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0012115 phoW CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002436 pstC_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002257 pstC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001918 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243960 pstC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008323 pstC2 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004961 pstC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007182 pstC2 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003301 pstC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0129196 pstC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005745 pstC2 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006347 pstC2 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003886 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009413 pstC2 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006627 pstC2 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033931 pstC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008912 pstC2 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004758 pstC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004708 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007903 pstC2 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008209 pstC2 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0004082 pstC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004980 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0005017 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005349 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000991 pstC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3904439 to 3915398
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012171bglFCDScomplement39037203905597Downstream
ABE-0012174bglGCDScomplement39057313906567Downstream
ABE-0012177phoUCDScomplement39068533907578Downstream
ABE-0012179pstBCDScomplement39075933908366Downstream
ABE-0285635repeat_regionforward39083873908450Downstream
ABE-0012184pstACDScomplement39085493909439Overlaps Downstream
ABE-0012186pstCCDScomplement39094393910398Matches
ABE-0285636repeat_regionforward39104433910477Upstream
ABE-0012190pstSCDScomplement39104853911525Upstream
ABE-0012198glmSCDScomplement39118393913668Upstream
ABE-0012201glmUCDScomplement39138303915200Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.