Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012190 (pstS) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012190 showshow history
Names
pstS R2pho JW3706 ECK3721 phoS nmpA phoR2 phoR2a b3728
Product
periplasmic-binding component of an ABC superfamily phosphate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3910485 3911525 1041 347
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001403
EnteroFam0012190: Trusted threshold=970.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR006059 (IPR006059 Bacterial extracellular solute-binding protein) Apr 2008
Automated Process Approved IPR005673 (IPR005673 Phosphate ABC transporter, substrate-binding protein PstS) Apr 2008
Automated Process Approved IPR024370 (IPR024370 PBP domain) Jul 2018
Automated Process Approved PF12849 (PF12849 PBP superfamily domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0035435 phosphate ion transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005673
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006793 phosphorus metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006817 phosphate ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005673
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006059
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0043190 ATP-binding cassette (ABC) transporter complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005673
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0042301 phosphate ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005673
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0015114 phosphate ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005673
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005315 inorganic phosphate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005673
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006059
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pstS Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym phoR2a Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym phoR2 Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym phoS Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym R2pho Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW3706 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3721 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym nmpA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b3728 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product periplasmic-binding component of an ABC superfamily phosphate transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Automated Process Approved alternate product name periplasmic phosphate binding protein, high-affinity Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name high-affinity phosphate transport protein (ABC superfamily, peri_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name high-affinity phosphate-specific transport system; periplasmic phosphate-binding protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012190: Trusted threshold=970.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001403
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR024370 PBP domain Protein Sequence Similarity - InterPro Domain: IPR024370
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF12849 PBP superfamily domain Protein Sequence Similarity - PFAM Model Name: PF12849
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005673 Phosphate ABC transporter, substrate-binding protein PstS Protein Sequence Similarity - InterPro Domain: IPR005673
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006059 Bacterial extracellular solute-binding protein Protein Sequence Similarity - InterPro Domain: IPR006059
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.155 (transport; substrate; phosphate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.8.1 (metabolism; metabolism of other compounds; phosphorous metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.p (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, periplasmic binding component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10734 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:2367271 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AG82 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012190 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948237 Published Annotation - Entrez Gene Database ID: 948237
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AG82 Published Annotation - Swiss-Prot Accession Number: P0AG82 Jan 2006
Person Approved function transport; Transport of small molecules: Anions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note high-affinity phosphate-specific transport system; periplasmic phosphate-binding protein; periplasmic-binding component of ABC superfamily; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0006793 - phosphorus metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76751.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0035435 phosphate ion transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005673
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006817 phosphate ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005673
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006059
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006793 phosphorus metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO cellular component GO:0043190 ATP-binding cassette (ABC) transporter complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005673
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006059
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015114 phosphate ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005673
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005315 inorganic phosphate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005673
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0042301 phosphate ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005673
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001403 pstS CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000507 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001627 pstS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001325 pstS CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001363 pstS CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001203 pstS CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000511 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000872 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004371 pstS CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004184 pstS CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004550 pstS CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000534 pstS CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009440 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016278 pstS CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004287 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000265 pstS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0307143 pstS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003925 pstS CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003574 pstS CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001613 pstS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004540 pstS CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003966 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007325 pstS CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003781 pstS CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000447 pstS CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010504 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007647 pstS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005870 PstS CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080838 pstS CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004140 pstS CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004887 pstS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007641 pstS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007546 pstS CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004289 pstS CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008670 pstS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005713 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008486 pstS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007001 pstS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006549 pstS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006705 pstS CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009991 pstS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0004958 pstS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007804 pstS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005589 pstS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005656 pstS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005521 pstS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006516 pstS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006871 pstS CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028858 pstS CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005198 pstS CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008629 pstS CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004130 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003473 pstS CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003627 pstS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004296 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004324 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004128 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004292 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178420 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004086 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004089 pstS CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134742 pstS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003064 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004289 pstS CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003669 pstS CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000754 pstS CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004181 pstS CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002430 pstS CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0009150 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003136 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003325 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003272 pstS CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000720 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000033 pstS CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000059 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011714 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003475 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287082 pstS CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007025 psts3 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064814 pstS CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002681 pstS CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002303 pstS CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001402 pstS CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009601 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137255 pstS CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003320 pstS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008249 pstS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003974 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004411 pstS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008490 pstS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012100 pstS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010919 pstS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008546 pstS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005906 pstS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007638 pstS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008493 pstS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006354 pstS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003736 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003697 pstS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004817 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008666 pstS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008134 pstS CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113271 pstS CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085392 pstS CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004658 pstS CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101903 pstS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005305 pstS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009334 pstS CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000952 pstS CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267940 pstS CDS
Person Approved Go view Shigella boydii 227 ADV-0003986 pstS CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009616 pstS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003319 pstS CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004536 pstS CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075314 pstS CDS
Person Approved Go view Shigella flexneri 301 ABT-0089949 pstS CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004014 pstS CDS
Person Approved Go view Shigella sonnei 046 ADD-0004256 pstS CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0004175 pstS CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007947 pstS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001592 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0012119 phoS CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002437 phoS CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002256 pstS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001919 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243967 pstS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008324 pstS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004962 pstS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007181 pstS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003300 pstS CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0129205 pstS CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005744 pstS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006346 pstS CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003885 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009412 pstS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006626 pstS CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033932 pstS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008911 pstS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004759 pstS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004706 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007904 pstS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008210 pstS CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0004083 pstS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004978 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0005015 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005355 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000990 pstS CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3905485 to 3916525
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012171bglFCDScomplement39037203905597Downstream
ABE-0012174bglGCDScomplement39057313906567Downstream
ABE-0012177phoUCDScomplement39068533907578Downstream
ABE-0012179pstBCDScomplement39075933908366Downstream
ABE-0285635repeat_regionforward39083873908450Downstream
ABE-0012184pstACDScomplement39085493909439Downstream
ABE-0012186pstCCDScomplement39094393910398Downstream
ABE-0285636repeat_regionforward39104433910477Downstream
ABE-0012190pstSCDScomplement39104853911525Matches
ABE-0012198glmSCDScomplement39118393913668Upstream
ABE-0012201glmUCDScomplement39138303915200Upstream
ABE-0012206atpCCDScomplement39155533915972Upstream
ABE-0012208atpDCDScomplement39159933917375Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.