Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012198 (glmS) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012198 showshow history
Names
glmS JW3707 ECK3722 b3729
Product
L-glutamine:D-fructose-6-phosphate aminotransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3911839 3913668 1830 610
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001404
EnteroFam0012198: Trusted threshold=1750.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000583 (IPR000583 (DEPRECATED) Class II glutamine amidotransferase domain) Apr 2008
Automated Process Approved IPR001347 (IPR001347 Sugar isomerase (SIS)) Apr 2008
Automated Process Approved IPR005855 (IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising) Apr 2008
Automated Process Approved IPR029055 (IPR029055 Nucleophile aminohydrolases, N-terminal) Jul 2018
Automated Process Approved PF01380 (PF01380 SIS domain) Jul 2018
Automated Process Approved PF13522 (PF13522 Glutamine amidotransferase domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:1901135 carbohydrate derivative metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001347
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009243 O antigen biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001347
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:1901137 carbohydrate derivative biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005855
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0046349 amino sugar biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000583
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0004360 glutamine-fructose-6-phosphate transaminase (isomerizing) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005855
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0097367 carbohydrate derivative binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001347
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005529 (DEPRECATED) sugar binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001347
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name glmS Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW3707 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3722 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3729 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product L-glutamine:D-fructose-6-phosphate aminotransferase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name L-glutamine:D-fructose-6-phosphate aminotransferase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012198: Trusted threshold=1750.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001404
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR000583 (DEPRECATED) Class II glutamine amidotransferase domain Protein Sequence Similarity - InterPro Domain: IPR000583
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF13522 Glutamine amidotransferase domain Protein Sequence Similarity - PFAM Model Name: PF13522
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01380 SIS domain Protein Sequence Similarity - PFAM Model Name: PF01380
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029055 Nucleophile aminohydrolases, N-terminal Protein Sequence Similarity - InterPro Domain: IPR029055
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising Protein Sequence Similarity - InterPro Domain: IPR005855
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001347 Sugar isomerase (SIS) Protein Sequence Similarity - InterPro Domain: IPR001347
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.6.1.16 Published Annotation - Swiss-Prot Accession Number: P17169 Feb 2006
Person Uncurated MultiFun 1.7.12 (metabolism; central intermediary metabolism; amino sugar conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.7 (metabolism; macromolecules (cellular constituent) biosynthesis; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.2 (cell structure; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.3.1 (metabolism; macromolecules (cellular constituent) biosynthesis; lipopolysaccharide; O antigen) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790167 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948241 Published Annotation - Entrez Gene Database ID: 948241
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P17169 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012198 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10382 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P17169 Published Annotation - Swiss-Prot Accession Number: P17169 Jan 2005
Person Approved function enzyme; Central intermediary metabolism: Amino sugars Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0005737 - cytoplasm; GO_function: GO:0042280 - cell surface antigen activity, host-interacting; GO_process: GO:0009243 - O antigen biosynthetic process; GO_process: GO:0009252 - peptidoglycan biosynthetic process; GO_process: GO:0046349 - amino sugar biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76752.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:1901135 carbohydrate derivative metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001347
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009243 O antigen biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001347
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000583
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0046349 amino sugar biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:1901137 carbohydrate derivative biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005855
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005529 (DEPRECATED) sugar binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001347
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0097367 carbohydrate derivative binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001347
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0004360 glutamine-fructose-6-phosphate transaminase (isomerizing) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005855
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001404 glmS CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000508 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000473 glmS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000409 glmS CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000377 glmS CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000475 glmS CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000512 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000891 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129296 glmS CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104754 glmS CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104133 glmS CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004374 glmS CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004183 glmS CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004549 glmS CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000533 glmS CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009430 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014780 glmS CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004307 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000264 glmS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0307154 glmS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003930 glmS CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003581 glmS CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001614 glmS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004539 glmS CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003967 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007324 glmS CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003782 glmS CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000446 glmS CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010503 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007646 glmS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005865 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080839 glmS CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004145 glmS CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004882 glmS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007646 glmS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007547 glmS CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004290 glmS CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008675 glmS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005722 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008494 glmS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007008 glmS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006557 glmS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006697 glmS CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009999 glmS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0004949 glmS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007811 glmS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005597 glmS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005664 glmS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005529 glmS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006524 glmS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006878 glmS CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028867 glmS CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005197 glmS CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008630 glmS CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004129 CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003626 glmS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004291 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004319 glmS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004127 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004293 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178421 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004091 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004094 glmS CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134749 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003073 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004290 glmS CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003670 glmS CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000753 glmS CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004182 glmS CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002429 glmS CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0009149 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003135 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003324 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003271 glmS CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000722 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000031 glmS CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000061 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011713 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287080 glmS CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007024 glmS CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064845 glmS CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002649 glmS CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003403 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001422 glmS CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009599 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0136842 glmS CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005680 glmS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008253 glmS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003973 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004415 glmS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008495 glmS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012114 glmS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010906 glmS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007689 glmS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008550 glmS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008816 glmS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005902 glmS CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008682 glmS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007642 glmS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008497 glmS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006350 glmS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003738 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003699 glmS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004821 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008670 glmS CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0009168 glmS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008138 glmS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008915 glmS CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113253 glmS CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085384 glmS CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004662 glmS CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101917 glmS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005301 glmS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009330 glmS CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009232 glmS CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000954 glmS CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0268404 glmS CDS
Person Approved Go view Shigella boydii 227 ADV-0004099 glmS CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009608 glmS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003096 glmS CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004532 glmS CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075218 glmS CDS
Person Approved Go view Shigella flexneri 301 ABT-0090025 glmS CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003988 glmS CDS
Person Approved Go view Shigella sonnei 046 ADD-0004237 glmS CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0004177 glmS CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000535 VC0487 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000259 glmS CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0008345 glmS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001594 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0012124 glmS CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002438 glmS CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002247 glmS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001920 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243971 glmS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008326 glmS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004964 glmS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007179 glmS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003299 glmS CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0129208 glmS CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005742 glmS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006344 glmS CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003884 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009410 glmS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006624 glmS CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033933 glmS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008909 glmS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004761 glmS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004705 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007906 glmS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008212 glmS CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0004084 glmS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004976 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0005013 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005367 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000987 glmS CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3906839 to 3918668
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012177phoUCDScomplement39068533907578Downstream
ABE-0012179pstBCDScomplement39075933908366Downstream
ABE-0285635repeat_regionforward39083873908450Downstream
ABE-0012184pstACDScomplement39085493909439Downstream
ABE-0012186pstCCDScomplement39094393910398Downstream
ABE-0285636repeat_regionforward39104433910477Downstream
ABE-0012190pstSCDScomplement39104853911525Downstream
ABE-0012198glmSCDScomplement39118393913668Matches
ABE-0012201glmUCDScomplement39138303915200Upstream
ABE-0012206atpCCDScomplement39155533915972Upstream
ABE-0012208atpDCDScomplement39159933917375Upstream
ABE-0012211atpGCDScomplement39174023918265Upstream
ABE-0012213atpACDScomplement39183163919857Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.