Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012201 (glmU) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012201 showshow history
Names
glmU yieA tms JW3708 ECK3723 b3730
Product
bifunctional N-acetyl glucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyl transferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3913830 3915200 1371 457
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001405
EnteroFam0012201: Trusted threshold=1233.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001228 (IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase) Apr 2008
Automated Process Approved IPR001451 (IPR001451 Hexapeptide repeat) Apr 2008
Automated Process Approved IPR005882 (IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase) Apr 2008
Automated Process Approved IPR011004 (IPR011004 Trimeric LpxA-like superfamily) Apr 2008
Automated Process Approved IPR025877 (IPR025877 MobA-like NTP transferase) Jul 2018
Automated Process Approved IPR029044 (IPR029044 Nucleotide-diphospho-sugar transferases) Jul 2018
Automated Process Approved PF00132 (PF00132 Bacterial transferase hexapeptide (six repeats)) Jul 2018
Automated Process Approved PF12804 (PF12804 MobA-like NTP transferase domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008299 isoprenoid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001228
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009103 lipopolysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005882
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009243 O antigen biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009310 amine catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0000902 cell morphogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005882
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009226 nucleotide-sugar biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009246 enterobacterial common antigen biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0019134 glucosamine-1-phosphate N-acetyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005882
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005882
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008415 (DEPRECATED) acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001451
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003977 UDP-N-acetylglucosamine diphosphorylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005882
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name glmU Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Automated Process Approved synonym tms Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK3723 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yieA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW3708 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3730 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product bifunctional N-acetyl glucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyl transferase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Apr 2007
Automated Process Approved alternate product name fused N-acetyl glucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyl transferase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name N-acetyl glucosamine-1-phosphate uridyltransferase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012201: Trusted threshold=1233.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001405
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR029044 Nucleotide-diphospho-sugar transferases Protein Sequence Similarity - InterPro Domain: IPR029044
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00132 Bacterial transferase hexapeptide (six repeats) Protein Sequence Similarity - PFAM Model Name: PF00132
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF12804 MobA-like NTP transferase domain Protein Sequence Similarity - PFAM Model Name: PF12804
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR025877 MobA-like NTP transferase Protein Sequence Similarity - InterPro Domain: IPR025877
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011004 Trimeric LpxA-like superfamily Protein Sequence Similarity - InterPro Domain: IPR011004
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase Protein Sequence Similarity - InterPro Domain: IPR005882
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Protein Sequence Similarity - InterPro Domain: IPR001228
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001451 Hexapeptide repeat Protein Sequence Similarity - InterPro Domain: IPR001451
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.3.1.157 Published Annotation - Swiss-Prot Accession Number: P0ACC7 Feb 2006
Person Approved EC number 2.7.7.23 Published Annotation - Swiss-Prot Accession Number: P0ACC7 Feb 2006
Person Uncurated MultiFun 1.6.4 (metabolism; macromolecules (cellular constituent) biosynthesis; enterobacterial common antigen (surface glycolipid)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.10 (metabolism; central intermediary metabolism; sugar nucleotide biosynthesis, conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.7 (metabolism; macromolecules (cellular constituent) biosynthesis; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.4 (metabolism; carbon utilization; amines) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.2 (cell structure; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.3.1 (metabolism; macromolecules (cellular constituent) biosynthesis; lipopolysaccharide; O antigen) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948246 Published Annotation - Entrez Gene Database ID: 948246
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0ACC7 Published Annotation - Swiss-Prot Accession Number: P0ACC7 Jan 2006
Automated Process Approved db xref ASAP:ABE-0012201 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ACC7 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790168 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11198 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Sugar-nucleotide biosynthesis, conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note N-acetyl glucosamine-1-phosphate uridyltransferase; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0005737 - cytoplasm; GO_function: GO:0042280 - cell surface antigen activity, host-interacting; GO_process: GO:0009243 - O antigen biosynthetic process; GO_process: GO:0009252 - peptidoglycan biosynthetic process; GO_process: GO:0009226 - nucleotide-sugar biosynthetic process; GO_process: GO:0009246 - enterobacterial common antigen biosynthetic process; GO_process: GO:0009310 - amine catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76753.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008299 isoprenoid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001228
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009243 O antigen biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009103 lipopolysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005882
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009310 amine catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009246 enterobacterial common antigen biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009226 nucleotide-sugar biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0000902 cell morphogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005882
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0019134 glucosamine-1-phosphate N-acetyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005882
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005882
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008415 (DEPRECATED) acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001451
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003977 UDP-N-acetylglucosamine diphosphorylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005882
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001405 glmU CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000509 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000221 glmU CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000184 glmU CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000388 glmU CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000543 glmU CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000513 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000892 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129297 glmU CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104755 glmU CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104134 glmU CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004375 glmU CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004182 glmU CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004548 glmU CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000532 glmU CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009429 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014781 glmU CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004308 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000263 glmU CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0307160 glmU CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003931 glmU CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003582 glmU CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001615 glmU CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004538 glmU CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003968 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007323 glmU CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003783 glmU CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000445 glmU CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010502 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007645 glmU CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005864 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080840 glmU CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004146 glmU CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004881 glmU CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007647 glmU CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007548 glmU CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004291 glmU CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008676 glmU CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005723 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008495 glmU CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007009 glmU CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006558 glmU CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006696 glmU CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010000 glmU CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0004948 glmU CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007812 glmU CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005598 glmU CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005665 glmU CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005530 glmU CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006525 glmU CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006879 glmU CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028868 glmU CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005196 glmU_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008631 glmU CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004128 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003474 glmU CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003625 glmU CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004290 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004318 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004126 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004294 glmU CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178422 glmU CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004092 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004095 glmU CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134750 glmU CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003074 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004291 glmU CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003671 glmU CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000752 glmU CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004183 glmU CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002428 glmU CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0009148 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003134 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003323 glmU CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003270 glmU CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000723 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000030 glmU CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000062 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011712 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003474 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287079 glmU CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007023 glmU CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064846 glmU CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002650 glmU CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002304 glmU CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001423 glmU CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009598 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0136844 glmU CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005682 glmU CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008254 glmU CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003972 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004416 glmU CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008496 glmU CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012119 glmU CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010896 glmU CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007688 glmU CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008551 glmU CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008815 glmU CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005901 glmU CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008683 glmU CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007643 glmU CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008498 glmU CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006349 glmU CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003739 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003700 glmU CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004822 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008671 glmU CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0009169 glmU CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008139 glmU CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008914 glmU CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113244 glmU CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085383 glmU CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004663 glmU CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101920 glmU CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005300 glmU CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009329 glmU CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009233 glmU CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000955 glmU CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0268408 glmU CDS
Person Approved Go view Shigella boydii 227 ADV-0004098 glmU CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009607 glmU CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003097 glmU CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004531 glmU CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075217 glmU CDS
Person Approved Go view Shigella flexneri 301 ABT-0090026 glmU CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003989 glmU CDS
Person Approved Go view Shigella sonnei 046 ADD-0004236 glmU CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0004178 glmU CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002875 VC2762 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000260 glmU CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0008347 glmU CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001595 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0012129 glmU CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002439 glmU CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002246 glmU CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001921 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243972 glmU CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008327 glmU CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004965 glmU CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007178 glmU CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003298 glmU CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0129213 glmU CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005741 glmU CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006343 glmU CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003883 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009409 glmU CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006623 glmU CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033934 glmU CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008907 glmU CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004762 glmU CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004704 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007907 glmU CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008213 glmU CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0004085 glmU CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004974 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0005012 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005377 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000986 glmU CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3908830 to 3920200
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012184pstACDScomplement39085493909439Downstream
ABE-0012186pstCCDScomplement39094393910398Downstream
ABE-0285636repeat_regionforward39104433910477Downstream
ABE-0012190pstSCDScomplement39104853911525Downstream
ABE-0012198glmSCDScomplement39118393913668Downstream
ABE-0012201glmUCDScomplement39138303915200Matches
ABE-0012206atpCCDScomplement39155533915972Upstream
ABE-0012208atpDCDScomplement39159933917375Upstream
ABE-0012211atpGCDScomplement39174023918265Upstream
ABE-0012213atpACDScomplement39183163919857Upstream
ABE-0012215atpHCDScomplement39198703920403Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.