Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012217 (atpF) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012217 showshow history
Names
atpF JW3714 ECK3729 uncF papF b3736
Product
ATP synthase Fo complex subunit b
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3920418 3920888 471 157
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001411
EnteroFam0012217: Trusted threshold=420.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002146 (IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast) Apr 2008
Automated Process Approved IPR005864 (IPR005864 ATP synthase, F0 complex, subunit b, bacterial) Apr 2008
Automated Process Approved IPR028987 (IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily) Jul 2018
Automated Process Approved PF00430 (PF00430 ATP synthase B/B' CF(0)) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0015986 ATP synthesis coupled proton transport Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0015986 ATP synthesis coupled proton transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002146
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002146, IPR005864
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016469 proton-transporting two-sector ATPase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002146
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0015078 proton transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002146, IPR005864
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0046961 proton-transporting ATPase activity, rotational mechanism GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005864
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016820 (DEPRECATED) hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002146
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005864
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name atpF Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym papF Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW3714 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym uncF Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK3729 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3736 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product ATP synthase Fo complex subunit b Published Annotation - EcoCyc Accession Number: EG10103
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name membrane-bound ATP synthase, F0 sector, subunit b Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name F0 sector of membrane-bound ATP synthase, subunit b Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012217: Trusted threshold=420.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001411
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily Protein Sequence Similarity - InterPro Domain: IPR028987
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005864 ATP synthase, F0 complex, subunit b, bacterial Protein Sequence Similarity - InterPro Domain: IPR005864
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00430 ATP synthase B/B' CF(0) Protein Sequence Similarity - PFAM Model Name: PF00430
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast Protein Sequence Similarity - InterPro Domain: IPR002146
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 7.1.2.2 Published Annotation - EcoCyc Accession Number: EG10103
Reference: Escherichia coli K-12 MG1655 		Dec 2019
Person Uncurated MultiFun 4.3.A.2 (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The H+/Na+-translocating F-, V- and A-type ATPase (F-ATPase) Superfamily) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.8 (metabolism; energy metabolism, carbon; ATP proton motive force interconversion) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.82 (transport; substrate; H+) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10103 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ABA0 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0ABA0 Published Annotation - Swiss-Prot Accession Number: P0ABA0 Jan 2006
Automated Process Approved db xref ASAP:ABE-0012217 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948247 Published Annotation - Entrez Gene Database ID: 948247
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1790174 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; ATP-proton motive force interconversion Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note membrane-bound ATP synthase, F0 sector, subunit b; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0015986 - ATP synthesis coupled proton transport Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76759.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0015986 ATP synthesis coupled proton transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002146
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0015986 ATP synthesis coupled proton transport Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002146, IPR005864
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016469 proton-transporting two-sector ATPase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002146
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016820 (DEPRECATED) hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002146
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0015078 proton transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002146, IPR005864
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0046961 proton-transporting ATPase activity, rotational mechanism GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005864
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005864
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001411 atpF CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000515 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000483 atpF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000300 atpF CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000384 atpF CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000266 atpF CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000519 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000898 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129274 atpF CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104730 atpF CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104109 atpF CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004383 atpF CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004176 atpF CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004541 atpF CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000525 atpF CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009421 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014791 atpF CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004315 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000256 atpF CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0307191 atpF CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003937 atpF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003588 atpF CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001629 atpF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004532 atpF CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003974 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007317 atpF CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0005387 CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000439 atpF CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010496 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007639 atpF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005858 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080849 atpF CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004152 atpF CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004875 atpF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007653 atpF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007554 atpF CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004297 atpF CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008683 atpF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005730 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008501 atpF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007015 atpF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006564 atpF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006690 atpF CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010006 atpF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0004942 atpF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007818 atpF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005604 atpF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005671 atpF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005536 atpF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006531 atpF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006885 atpF CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028874 atpF CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005190 atpF CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008638 atpF CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004122 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003480 atpF CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003619 atpF CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004283 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004311 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004120 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004302 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178428 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004098 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004101 atpF CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134756 atpF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003081 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004300 atpF CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003677 atpF CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000746 atpF CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004189 atpF CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002421 atpF CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0009139 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003128 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003317 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003263 atpF CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000729 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000024 atpF CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000068 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011706 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003468 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287073 atpF CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007017 atpF CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064853 atpF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002641 atpF CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003407 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001441 atpF CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009590 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0136862 atpF CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005688 atpF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008261 atpF CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003965 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004423 atpF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008504 atpF CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012152 atpF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010870 atpF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007681 atpF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008558 atpF CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005894 atpF CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007650 atpF CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008505 atpF CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006342 atpF CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003746 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003707 atpF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004829 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008678 atpF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008147 atpF CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113223 atpF CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085376 atpF CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004671 atpF CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101945 atpF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005293 atpF CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008916 atpF CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000961 atpF CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0268414 atpF CDS
Person Approved Go view Shigella boydii 227 ADV-0004092 atpF CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009601 atpF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003110 atpF CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004525 atpF CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075211 atpF CDS
Person Approved Go view Shigella flexneri 301 ABT-0090032 atpF CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003995 atpF CDS
Person Approved Go view Shigella sonnei 046 ADD-0004230 atpF CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0004185 atpF CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002881 VC2768 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000266 atpF CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0008356 atpF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001601 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0012160 atpF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002445 atpF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002240 atpF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001927 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243978 atpF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008333 atpF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004971 atpF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007172 atpF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003292 atpF CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0129242 atpF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005735 atpF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006337 atpF CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009403 atpF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006617 atpF CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033940 atpF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008901 atpF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004768 atpF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004698 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007913 atpF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008219 atpF CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0004091 atpF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004968 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0005006 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005416 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000979 atpF CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21425mutantTn5 InsertionRequest the StrainABE-0012217atpFatpF::Tn5KAN-I-SceI at position 159 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3915418 to 3925888
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012206atpCCDScomplement39155533915972Downstream
ABE-0012208atpDCDScomplement39159933917375Downstream
ABE-0012211atpGCDScomplement39174023918265Downstream
ABE-0012213atpACDScomplement39183163919857Downstream
ABE-0012215atpHCDScomplement39198703920403Downstream
ABE-0012217atpFCDScomplement39204183920888Matches
ABE-0012220atpECDScomplement39209503921189Upstream
ABE-0012222atpBCDScomplement39212363922051Upstream
ABE-0012224atpICDScomplement39220603922440Upstream
ABE-0012229rsmGCDScomplement39230573923680Upstream
ABE-0012231mnmGCDScomplement39237443925633Upstream
ABE-0012233rep_originforward39257443925975Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.