Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012222 (atpB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012222 showshow history
Names
atpB JW3716 ECK3731 uncB papD b3738
Product
ATP synthase Fo complex subunit a
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3921236 3922051 816 272
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001413
EnteroFam0012222: Trusted threshold=713.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000568 (IPR000568 ATP synthase, F0 complex, subunit A) Apr 2008
Automated Process Approved IPR035908 (IPR035908 ATP synthase, F0 complex, subunit A superfamily) Jul 2018
Automated Process Approved PF00119 (PF00119 ATP synthase A chain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0015986 ATP synthesis coupled proton transport Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0015992 (DEPRECATED) proton transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000568
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006457 protein folding Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000568
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016469 proton-transporting two-sector ATPase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000568
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000568
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0015078 proton transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000568
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016820 (DEPRECATED) hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000568
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name atpB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3731 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3716 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym uncB Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym papD Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b3738 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product ATP synthase Fo complex subunit a Published Annotation - EcoCyc Accession Number: EG10099
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name F0 sector of membrane-bound ATP synthase, subunit a Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name membrane-bound ATP synthase, F0 sector, subunit a Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name membrane-bound ATP synthase, F0 sector, subunit a, important for FO assembly Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012222: Trusted threshold=713.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001413
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR035908 ATP synthase, F0 complex, subunit A superfamily Protein Sequence Similarity - InterPro Domain: IPR035908
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000568 ATP synthase, F0 complex, subunit A Protein Sequence Similarity - InterPro Domain: IPR000568
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00119 ATP synthase A chain Protein Sequence Similarity - PFAM Model Name: PF00119
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated EC number 7.1.2.2 Published Annotation - EcoCyc Accession Number: EG10099
Reference: Escherichia coli K-12 MG1655 		Dec 2019
Person Uncurated MultiFun 2.3.4 (information transfer; protein related; chaperoning, folding) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.8 (metabolism; energy metabolism, carbon; ATP proton motive force interconversion) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.2 (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The H+/Na+-translocating F-, V- and A-type ATPase (F-ATPase) Superfamily) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.82 (transport; substrate; H+) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10099 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AB98 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AB98 Published Annotation - Swiss-Prot Accession Number: P0AB98 Jan 2006
Automated Process Approved db xref ASAP:ABE-0012222 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948252 Published Annotation - Entrez Gene Database ID: 948252
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1790176 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; ATP-proton motive force interconversion Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note membrane-bound ATP synthase, F0 sector, subunit a; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0015986 - ATP synthesis coupled proton transport; GO_process: GO:0006457 - protein folding Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76761.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0015986 ATP synthesis coupled proton transport Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006457 protein folding Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0015992 (DEPRECATED) proton transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000568
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016469 proton-transporting two-sector ATPase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000568
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000568
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000568
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0015078 proton transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000568
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016820 (DEPRECATED) hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000568
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001413 atpB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000517 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000631 atpB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000580 atpB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000382 atpB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000862 atpB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000521 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000900 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129272 atpB CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104728 atpB CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104107 atpB CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004385 atpB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004174 atpB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004539 atpB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000523 atpB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009418 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014794 atpB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004317 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000254 atpB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0307200 atpB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003939 atpB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003590 atpB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001627 atpB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004530 atpB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003976 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007315 atpB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003789 atpB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000437 atpB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010493 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007637 atpB CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005856 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080851 atpB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004154 atpB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004873 atpB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007655 atpB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007556 atpB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004299 atpB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008685 atpB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005732 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008503 atpB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007017 atpB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006566 atpB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006688 atpB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010008 atpB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0004940 atpB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007820 atpB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005606 atpB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005673 atpB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006887 atpB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028876 atpB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005188 atpB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008640 atpB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004120 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003482 atpB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003617 atpB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004281 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004309 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004118 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004304 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178430 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004100 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004103 atpB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134758 atpB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003083 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004302 atpB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003679 atpB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000744 atpB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004191 atpB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002419 atpB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0009136 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003126 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003315 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003261 atpB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000731 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000022 atpB CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000070 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011704 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003466 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287071 atpB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007015 atpB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064855 atpB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002661 atpB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002309 atpB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001443 atpB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009587 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0136868 atpB CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005690 atpB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008263 atpB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003963 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004425 atpB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008506 atpB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012161 atpB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010861 atpB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007679 atpB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008560 atpB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005892 atpB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008616 atpB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007652 atpB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008507 atpB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006340 atpB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003748 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003709 atpB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004831 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008680 atpB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008149 atpB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008776 atpB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113217 atpB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085374 atpB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004673 atpB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101951 atpB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005291 atpB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009262 atpB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008918 atpB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000963 atpB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0268416 atpB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009599 atpB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003108 atpB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004523 atpB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075209 atpB CDS
Person Approved Go view Shigella flexneri 301 ABT-0090034 atpB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003997 atpB CDS
Person Approved Go view Shigella sonnei 046 ADD-0004228 atpB CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0004187 atpB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002883 VC2770 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000268 atpB CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0008358 atpB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001603 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0012169 atpB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002447 atpB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002238 atpB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001929 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243983 atpB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008335 atpB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004974 atpB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007170 atpB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003290 atpB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0129250 atpB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005733 atpB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006335 atpB CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009401 atpB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006615 atpB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033942 atpB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008899 atpB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004771 atpB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004695 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007915 atpB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008221 atpB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0004093 atpB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004965 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0005003 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005421 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000977 atpB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3916236 to 3927051
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012208atpDCDScomplement39159933917375Downstream
ABE-0012211atpGCDScomplement39174023918265Downstream
ABE-0012213atpACDScomplement39183163919857Downstream
ABE-0012215atpHCDScomplement39198703920403Downstream
ABE-0012217atpFCDScomplement39204183920888Downstream
ABE-0012220atpECDScomplement39209503921189Downstream
ABE-0012222atpBCDScomplement39212363922051Matches
ABE-0012224atpICDScomplement39220603922440Upstream
ABE-0012229rsmGCDScomplement39230573923680Upstream
ABE-0012231mnmGCDScomplement39237443925633Upstream
ABE-0012233rep_originforward39257443925975Upstream
ABE-0012235mioCCDScomplement39260123926455Upstream
ABE-0012237asnCCDScomplement39265453927003Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.