Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012251 (kup) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012251 showshow history
Names
kup trkD JW5609 ECK3741 b3747
Product
potassium transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3931316 3933184 1869 623
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001421
EnteroFam0012251: Trusted threshold=1763.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003855 (IPR003855 Potassium transporter) Apr 2008
Automated Process Approved PF02705 (PF02705 K+ potassium transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006970 response to osmotic stress Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0071805 potassium ion transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003855
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006813 potassium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003855
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003855
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015079 potassium ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003855
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name kup Published Annotation - PubMed ID: 2649491
Reference: Escherichia coli K-12 		Apr 2008
Person Approved synonym JW5609 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym trkD Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3741 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3747 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product potassium transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name low-affinity potassium transport system (KUP family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name low affinity potassium transport system Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012251: Trusted threshold=1763.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001421
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF02705 K+ potassium transporter Protein Sequence Similarity - PFAM Model Name: PF02705
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003855 Potassium transporter Protein Sequence Similarity - InterPro Domain: IPR003855
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.5.1 (cell processes; adaptation to stress; osmotic pressure) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.96 (transport; substrate; K+) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.72 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The K+ uptake permease (KUP) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11541 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948255 Published Annotation - Entrez Gene Database ID: 948255
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P63183 Published Annotation - Swiss-Prot Accession Number: P63183 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P63183 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:48994960 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012251 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Cations Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note low affinity potassium transport system; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0006970 - response to osmotic stress Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAT48204.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved sequence correction version m56: frameshift error corrected, altering C-term. Experimental - GenBank Accession Number: AG613311
Reference: Escherichia coli 		May 2004
Person Approved sequence correction version m56: frameshift error corrected, altering C-term. Experimental - GenBank Accession Number: AG613310
Reference: Escherichia coli 		May 2004
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0071805 potassium ion transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003855
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006970 response to osmotic stress Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006813 potassium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003855
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003855
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015079 potassium ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003855
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001421 kup CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000525 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000427 kup CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000594 kup CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000008 kup CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000966 kup CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000531 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000908 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004394 kup CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004164 kup CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004530 trkD CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000514 trkD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009407 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014803 trkD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004325 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000245 kup CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001618 kup CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004521 kup CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003985 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007299 kup CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003798 trkD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000428 kup CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010483 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007628 kup CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009731 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080860 trkD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004163 kup CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004864 kup CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010408 kup CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007565 kup CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004309 kup CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008694 kup CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005741 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008513 kup CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007026 kup CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007217 kup CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010531 kup CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010017 kup CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010457 kup CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007829 kup CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005615 kup CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007456 kup CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010615 kup CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008682 kup CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006896 kup CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028886 trkD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005179 kup CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008649 kup CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004111 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003490 trkD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003607 trkD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004272 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004300 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004109 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004313 trkD CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178439 trkD CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004109 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004112 kup CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134767 trkD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003093 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004311 kup CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000734 kup CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004200 kup CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002410 kup CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0009126 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003115 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003305 trkD CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003456 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287062 trkD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007006 kup CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060205 trkD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002672 kup CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000002 kup CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001453 trkD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009576 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004064 kup CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008274 kup CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003952 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004435 trkD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008517 kup CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012185 kup CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010838 kup CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007669 kup CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008571 kup CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008763 kup CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008627 kup CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007663 kup CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008518 kup CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006329 kup CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003757 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003718 trkD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004843 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008691 kup CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0009004 kup CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008160 kup CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008787 kup CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113203 trkD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085365 trkD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004683 trkD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101983 trkD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005280 kup CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009273 kup CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008929 kup CDS
Person Approved Go view Shigella boydii 227 ADV-0004103 kup CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009589 kup CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003083 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004514 kup CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075197 kup CDS
Person Approved Go view Shigella flexneri 301 ABT-0090044 kup CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003985 kup CDS
Person Approved Go view Shigella sonnei 046 ADD-0004268 trkD CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0004198 kup CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003418 VCA0529 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000273 trkD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001613 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000016 kup CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002457 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002228 trkD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001939 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234229 trkD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004107 kup CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000010 trkD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007161 kup CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003282 kup CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115316 trkD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005723 kup CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006321 kup CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001652 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009391 kup CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006605 kup CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029583 trkD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008890 kup CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000007 trkD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004686 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007928 kup CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0003930 kup CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000007 trkD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004955 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004993 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005455 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000967 kup CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3926316 to 3938184
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012235mioCCDScomplement39260123926455Upstream
ABE-0012237asnCCDScomplement39265453927003Upstream
ABE-0012242asnACDSforward39271553928147Upstream
ABE-0012244viaACDScomplement39281523929603Upstream
ABE-0012247ravACDScomplement39295973931093Upstream
ABE-0012251kupCDSforward39313163933184Matches
ABE-0012256rbsDCDSforward39333513933770Downstream
ABE-0012259rbsACDSforward39337783935283Downstream
ABE-0012261rbsCCDSforward39352883936253Downstream
ABE-0012264rbsBCDSforward39362783937168Downstream
ABE-0285831rbsZncRNAforward39370453937278Downstream
ABE-0012266rbsKCDSforward39372943938223Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.