Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012259 (rbsA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012259 showshow history
Names
rbsA JW3728 ECK3743 rbsT rbsP b3749
Product
ATP-binding component of an ABC superfamily ribose transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3933778 3935283 1506 502
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Apr 2008
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00005 (PF00005 ABC transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rbsA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym rbsT Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym rbsP Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK3743 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3728 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3749 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product ATP-binding component of an ABC superfamily ribose transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name ATP-binding component of D-ribose high-affinity transport system Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name high-affinity D-ribose transport protein (ABC superfamily, atp_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family PF00005 ABC transporter Protein Sequence Similarity - PFAM Model Name: PF00005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 3.6.1.3 Published Annotation - Database Name: EC2GO: GO:0016887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 3.6.3.17 Published Annotation - Swiss-Prot Accession Number: P04983 Feb 2006
Person Uncurated MultiFun 4.3.A.1.a (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.48 (transport; substrate; D-ribose) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P04983 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790190 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012259 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10814 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948264 Published Annotation - Entrez Gene Database ID: 948264
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P04983 Published Annotation - Swiss-Prot Accession Number: P04983 Jan 2005
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note ATP-binding component of D-ribose high-affinity transport system; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76772.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 9.82
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001818 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002308 rbsA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002064 rbsA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001348 rbsA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001641 rbsA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000536 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000914 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004396 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004162 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004528 rbsA_6 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000512 rbsA_2 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009400 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018137 rbsA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004327 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000243 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0295999 rbsA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000096 rbsA CDS
Automated Process Approved Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000015 rbsA CDS
Automated Process Approved Go view Escherichia albertii TW07627 AFX-0001637 rbsA CDS
Automated Process Approved Go view Escherichia coli 101-1 (EAEC) BAB-0004519 rbsA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003987 CDS
Automated Process Approved Go view Escherichia coli 53638 (EIEC) ADP-0007297 rbsA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003800 rbsA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000426 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010481 CDS
Automated Process Approved Go view Escherichia coli B171 (EPEC) ADN-0007626 rbsA CDS
Automated Process Approved Go view Escherichia coli B7A (ETEC) ADK-0009733 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080862 rbsA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004165 rbsA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004862 rbsA CDS
Automated Process Approved Go view Escherichia coli E110019 (EPEC) ADM-0010410 rbsA CDS
Automated Process Approved Go view Escherichia coli E22 (EPEC) ADL-0007567 rbsA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004311 rbsA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008696 rbsA CDS
Automated Process Approved Go view Escherichia coli EC4024 (EHEC) BBI-0005743 CDS
Automated Process Approved Go view Escherichia coli EC4042 (EHEC) BBA-0008515 rbsA CDS
Automated Process Approved Go view Escherichia coli EC4045 (EHEC) BBB-0007028 rbsA CDS
Automated Process Approved Go view Escherichia coli EC4076 (EHEC) BAZ-0007219 rbsA CDS
Automated Process Approved Go view Escherichia coli EC4113 (EHEC) BAY-0010529 rbsA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010019 rbsA CDS
Automated Process Approved Go view Escherichia coli EC4196 (EHEC) BAX-0010455 rbsA CDS
Automated Process Approved Go view Escherichia coli EC4206 (EHEC) BAW-0007831 rbsA CDS
Automated Process Approved Go view Escherichia coli EC4401 (EHEC) BAV-0005617 rbsA CDS
Automated Process Approved Go view Escherichia coli EC4486 (EHEC) BAU-0007458 rbsA CDS
Automated Process Approved Go view Escherichia coli EC4501 (EHEC) BAT-0010617 rbsA CDS
Automated Process Approved Go view Escherichia coli EC508 (EHEC) BBJ-0008684 rbsA CDS
Automated Process Approved Go view Escherichia coli EC869 (EHEC) BBC-0006898 rbsA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028888 rbsA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005177 rbsA_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008651 rbsA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004109 CDS
Person Approved Go view Escherichia coli K-12 DH10B AEC-0003492 rbsA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003605 rbsA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004270 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004298 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004107 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004315 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178441 pseudogene
Automated Process Approved Go view Escherichia coli SE11 AFS-0004111 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004114 rbsA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134769 rbsA CDS
Automated Process Approved Go view Escherichia coli TW14588 (EHEC) BBK-0003095 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004313 rbsA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003690 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000732 CDS
Person Approved Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004202 rbsA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002408 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0009124 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003110 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003300 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003246 rbsA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000745 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000007 rbsA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000084 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011689 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003451 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287056 rbsA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007001 rbsA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060210 rbsA CDS
Automated Process Approved Go view Pectobacterium brasiliensis 1692 AED-0002666 rbsA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000005 rbsA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001458 rbsA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009569 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0136888 rbsA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003547 CDS
Automated Process Approved Go view Salmonella Agona SL483 BBX-0008276 rbsA CDS
Automated Process Approved Go view Salmonella Arizonae CDC 346-86 BCD-0003949 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004437 rbsA CDS
Automated Process Approved Go view Salmonella Dublin CT_02021853 BCB-0008519 rbsA CDS
Automated Process Approved Go view Salmonella Enteritidis P125109 BCF-0012191 rbsA CDS
Automated Process Approved Go view Salmonella Hadar RI_05P066 BBT-0007667 rbsA CDS
Automated Process Approved Go view Salmonella Heidelberg SL476 BBV-0008573 rbsA CDS
Automated Process Approved Go view Salmonella Heidelberg SL486 BBW-0008765 rbsA CDS
Automated Process Approved Go view Salmonella Javiana GA_MM04042433 BCA-0005879 rbsA CDS
Automated Process Approved Go view Salmonella Kentucky CDC 191 BBZ-0008629 rbsA CDS
Automated Process Approved Go view Salmonella Kentucky CVM29188 BBP-0007665 rbsA CDS
Automated Process Approved Go view Salmonella Newport SL254 BBQ-0008520 rbsA CDS
Automated Process Approved Go view Salmonella Newport SL317 BBR-0006327 rbsA CDS
Automated Process Approved Go view Salmonella Paratyphi A AKU_12601 BCH-0003759 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003720 rbsA CDS
Automated Process Approved Go view Salmonella Paratyphi B SPB7 BCC-0004845 CDS
Automated Process Approved Go view Salmonella Saintpaul SARA23 BBN-0008693 rbsA CDS
Automated Process Approved Go view Salmonella Saintpaul SARA29 BBM-0009002 rbsA CDS
Automated Process Approved Go view Salmonella Schwarzengrund CVM19633 BBO-0008162 rbsA CDS
Automated Process Approved Go view Salmonella Schwarzengrund SL480 BBY-0008789 rbsA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113197 rbsA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085363 rbsA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004685 rbsA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101992 rbsA CDS
Automated Process Approved Go view Salmonella Virchow SL491 BBS-0005278 rbsA CDS
Automated Process Approved Go view Salmonella Weltevreden SL484 BBU-0009275 rbsA CDS
Automated Process Approved Go view Salmonella enterica CVM23701 BBL-0008931 rbsA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000975 CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0075195 rbsA pseudogene
Person Approved Go view Shigella sonnei 046 ADD-0004270 rbsA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0004200 CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003017 VCA0128 CDS
Automated Process Approved Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001615 CDS
Automated Process Approved Go view Yersinia enterocolitica 8081 BAH-0000020 rbsA CDS
Automated Process Approved Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002459 rbsA_3 CDS
Automated Process Approved Go view Yersinia intermedia ATCC 29909 [T] AEH-0002226 rbsA_5 CDS
Automated Process Approved Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001941 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003981 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005460 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000965 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3928778 to 3940283
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012244viaACDScomplement39281523929603Upstream
ABE-0012247ravACDScomplement39295973931093Upstream
ABE-0012251kupCDSforward39313163933184Upstream
ABE-0012256rbsDCDSforward39333513933770Upstream
ABE-0012259rbsACDSforward39337783935283Matches
ABE-0012261rbsCCDSforward39352883936253Downstream
ABE-0012264rbsBCDSforward39362783937168Downstream
ABE-0285831rbsZncRNAforward39370453937278Downstream
ABE-0012266rbsKCDSforward39372943938223Downstream
ABE-0012271rbsRCDSforward39382273939219Downstream
ABE-0012273hsrACDScomplement39391853940612Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.