Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012266 (rbsK) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012266 showshow history
Names
rbsK JW3731 ECK3746 b3752
Product
ribokinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3937294 3938223 930 310
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001424
EnteroFam0012266: Trusted threshold=772; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR011611 (IPR011611 Carbohydrate kinase PfkB) Apr 2008
Automated Process Approved IPR002139 (IPR002139 Ribokinase/fructokinase) Apr 2008
Automated Process Approved IPR002173 (IPR002173 Carbohydrate/purine kinase, PfkB, conserved site) Apr 2008
Automated Process Approved IPR011877 (IPR011877 Ribokinase) Apr 2008
Automated Process Approved IPR029056 (IPR029056 Ribokinase-like) Jul 2018
Automated Process Approved PF00294 (PF00294 pfkB family carbohydrate kinase) Jul 2018
Automated Process Uncurated GH28 (GH28 Glycoside Hydrolase Family 28) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006014 D-ribose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002139
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004747 ribokinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002139
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name rbsK Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3746 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3731 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3752 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product ribokinase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name ribokinase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012266: Trusted threshold=772; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001424
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR002139 Ribokinase/fructokinase Protein Sequence Similarity - InterPro Domain: IPR002139
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011611 Carbohydrate kinase PfkB Protein Sequence Similarity - InterPro Domain: IPR011611
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002173 Carbohydrate/purine kinase, PfkB, conserved site Protein Sequence Similarity - InterPro Domain: IPR002173
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011877 Ribokinase Protein Sequence Similarity - InterPro Domain: IPR011877
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00294 pfkB family carbohydrate kinase Protein Sequence Similarity - PFAM Model Name: PF00294
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated protein family GH28 Glycoside Hydrolase Family 28 Protein Sequence Similarity - CAZy Model Name: GH28
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029056 Ribokinase-like Protein Sequence Similarity - InterPro Domain: IPR029056
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.1.15 Published Annotation - Swiss-Prot Accession Number: P0A9J6 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A9J6 Published Annotation - Swiss-Prot Accession Number: P0A9J6 Jan 2006
Automated Process Approved db xref GeneID:948260 Published Annotation - Entrez Gene Database ID: 948260
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1790193 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A9J6 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012266 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10818 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76775.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006014 D-ribose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002139
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004747 ribokinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002139
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001424 rbsK CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000528 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001095 rbsK CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001093 rbsK CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001193 rbsK CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000304 rbsK CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000539 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000917 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004399 rbsK CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004159 rbsK CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004525 rbsK_4 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000509 rbsK_2 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009396 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018141 rbsK CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004330 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000240 rbsK CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296012 rbsK CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000099 rbsK CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000018 rbsK CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001640 rbsK CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004516 rbsK CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003991 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007294 rbsK CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003803 rbsK CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000423 rbsK CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010477 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007623 rbsK CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009736 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080865 rbsK CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004168 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004859 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010413 rbsK CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007570 rbsK CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004314 rbsK CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008699 rbsK CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005746 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008518 rbsK CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007031 rbsK CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007222 rbsK CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010526 rbsK CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010022 rbsK CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010452 rbsK CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007834 rbsK CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005620 rbsK CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007461 rbsK CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010840 rbsK CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008687 rbsK CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006901 rbsK CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028891 rbsK CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005174 rbsK_4 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008654 rbsK CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004106 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003495 rbsK CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003602 rbsK CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004267 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004295 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004104 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004318 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178444 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004114 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004117 rbsK CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134772 rbsK CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003098 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004316 rbsK CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003693 rbsK CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000729 rbsK CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004205 rbsK CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002405 rbsK CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0009119 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003107 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003297 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003243 rbsK CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000748 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000004 rbsK CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000087 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011686 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003448 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287053 rbsK CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006998 rbsk3 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060213 rbsK CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002962 rbsK CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002316 rbsK CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001461 rbsK CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009564 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0136896 rbsK CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002415 rbsK CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008279 rbsK CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003946 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004440 rbsK CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008522 rbsK CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012203 rbsK CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010823 rbsK CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007664 rbsK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008576 rbsK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008768 rbsK CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005876 rbsK CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008632 rbsK CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007668 rbsK CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008523 rbsK CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006324 rbsK CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003763 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003723 rbsK CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004848 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008696 rbsK CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008999 rbsK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008165 rbsK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008792 rbsK CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113191 rbsK CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085360 rbsK CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004688 rbsK CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102001 rbsK CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005275 rbsK CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009278 rbsK CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008934 rbsK CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000978 rbsK CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264365 rbsK CDS
Person Approved Go view Shigella boydii 227 ADV-0004108 rbsK CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009584 rbsK CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003081 rbsK CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004507 rbsK CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075189 rbsK CDS
Person Approved Go view Shigella flexneri 301 ABT-0256143 rbsK CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003978 rbsK CDS
Person Approved Go view Shigella sonnei 046 ADD-0004273 rbsK CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0004203 rbsK CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003020 VCA0131 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000018 rbsK CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003642 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000033 rbsK CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002462 rbsK_3 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002223 rbsK CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001944 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234245 rbsK CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004109 rbsK CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000012 rbsK CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007159 rbsK CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003280 rbsK CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115330 rbsK CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005721 rbsK CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006319 rbsK CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001650 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009389 rbsK CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006603 rbsK CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029585 rbsK CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008888 rbsK CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000009 rbsK CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000265 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007930 rbsK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0003932 rbsK CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000009 rbsK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004953 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004991 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005479 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000962 rbsK CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3932294 to 3943223
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012251kupCDSforward39313163933184Upstream
ABE-0012256rbsDCDSforward39333513933770Upstream
ABE-0012259rbsACDSforward39337783935283Upstream
ABE-0012261rbsCCDSforward39352883936253Upstream
ABE-0012264rbsBCDSforward39362783937168Upstream
ABE-0285831rbsZncRNAforward39370453937278Upstream
ABE-0012266rbsKCDSforward39372943938223Matches
ABE-0012271rbsRCDSforward39382273939219Downstream
ABE-0012273hsrACDScomplement39391853940612Downstream
ABE-0012275yiePCDScomplement39406353941327Downstream
ABE-0012279rrsCrRNAforward39418083943349Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.