Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012316 (ilvE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012316 showshow history
Names
ilvE JW5606 ECK3762 ilvJ ilvC b3770
Product
branched-chain amino-acid aminotransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3952484 3953413 930 310
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001428
EnteroFam0012316: Trusted threshold=941.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001544 (IPR001544 Aminotransferase class IV) Apr 2008
Automated Process Approved IPR005785 (IPR005785 Branched-chain amino acid aminotransferase I) Apr 2008
Automated Process Approved IPR036038 (IPR036038 Aminotransferase-like, PLP-dependent enzymes) Jul 2018
Automated Process Approved PF01063 (PF01063 Amino-transferase class IV) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009081 branched-chain amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006523 alanine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001544
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009098 leucine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004084 branched-chain-amino-acid transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001544
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name ilvE Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ilvJ Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK3762 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5606 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ilvC Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b3770 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product branched-chain amino-acid aminotransferase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name branched-chain amino-acid aminotransferase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012316: Trusted threshold=941.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001428
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR036038 Aminotransferase-like, PLP-dependent enzymes Protein Sequence Similarity - InterPro Domain: IPR036038
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001544 Aminotransferase class IV Protein Sequence Similarity - InterPro Domain: IPR001544
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01063 Amino-transferase class IV Protein Sequence Similarity - PFAM Model Name: PF01063
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005785 Branched-chain amino acid aminotransferase I Protein Sequence Similarity - InterPro Domain: IPR005785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.6.1.42 Published Annotation - Swiss-Prot Accession Number: P0AB80 Feb 2006
Person Uncurated MultiFun 1.5.1.17 (metabolism; building block biosynthesis; amino acids; alanine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.18 (metabolism; building block biosynthesis; amino acids; isoleucine/valine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.19 (metabolism; building block biosynthesis; amino acids; leucine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AB80 Published Annotation - Swiss-Prot Accession Number: P0AB80 Jan 2006
Automated Process Approved db xref EcoGene:EG10497 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:48994963 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AB80 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012316 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948278 Published Annotation - Entrez Gene Database ID: 948278
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Amino acid biosynthesis: Isoleucine, Valine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0006523 - alanine biosynthetic process; GO_process: GO:0009098 - leucine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAT48207.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved sequence correction version m56: R151 to A Experimental - GenBank Accession Number: AG613319
Reference: Escherichia coli 		May 2004
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001544
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009098 leucine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009081 branched-chain amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006523 alanine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004084 branched-chain-amino-acid transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001544
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001428 ilvE CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000831 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000587 ilvE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000768 ilvE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001768 ilvE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000914 ilvE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002352 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002424 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000242 ilvE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004042 ilvE CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004510 ilvE CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000496 ilvE CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004546 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014943 ilvE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004031 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000127 ilvE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296466 ilvE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000231 ilvE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000207 ilvE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001653 ilvE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007935 ilvE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004005 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007279 ilvE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003813 ilvE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000414 ilvE CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010459 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009586 ilvE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006183 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080883 ilvE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004185 ilvE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000278 ilvE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009730 ilvE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010090 ilvE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004330 ilvE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008714 ilvE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002582 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008533 ilvE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007046 ilvE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007237 ilvE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009831 ilvE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010037 ilvE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008288 ilvE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007849 ilvE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005635 ilvE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007476 ilvE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009708 ilvE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008702 ilvE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006916 ilvE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028907 ilvE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009679 ilvE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008673 ilvE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004387 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003504 ilvE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003584 ilvE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004531 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004450 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004355 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004336 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178455 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004131 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004132 ilvE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134788 ilvE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004740 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004335 ilvE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003810 ilvE CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000908 ilvE CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004317 ilvE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002275 ilvE CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008865 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002990 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000495 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003110 ilvE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000870 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003935 ilvE CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000219 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011568 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000628 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288343 ilvE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006867 ilvE CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064558 ilvE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002484 ilvE CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001152 ilvE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003469 ilvE CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009320 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147470 ilvE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008294 ilvE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003931 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004462 ilvE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008537 ilvE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012246 ilvE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010787 ilvE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007649 ilvE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008591 ilvE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008530 ilvE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007496 ilvE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008468 ilvE CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007682 ilvE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008538 ilvE CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008885 ilvE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003780 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003740 ilvE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004868 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008712 ilvE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008393 ilvE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008180 ilvE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007574 ilvE CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112729 ilvE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085117 ilvE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004706 ilvE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102040 ilvE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005260 ilvE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009090 ilvE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008643 ilvE CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001105 ilvE CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263891 ilvE CDS
Person Approved Go view Shigella boydii 227 ADV-0004123 ilvE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009568 ilvE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007475 ilvE CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004489 ilvE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075172 ilvE CDS
Person Approved Go view Shigella flexneri 301 ABT-0090059 ilvE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003963 ilvE CDS
Person Approved Go view Shigella sonnei 046 ADD-0004294 ilvE CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003820 ilvE CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000030 VC0029 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000572 ilvE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003171 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000475 ilvE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003556 ilvE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003599 ilvE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003490 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241819 ilvE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004589 ilvE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000159 ilvE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007697 ilvE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003486 ilvE CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128416 ilvE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005975 ilvE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006425 ilvE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003604 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009114 ilvE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007188 ilvE CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029937 ilvE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006872 ilvE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000091 ilvE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004212 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008355 ilvE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004087 ilvE CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000150 ilvE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000168 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004820 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000431 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000712 ilvE CDS
Molecular Interactions to toptop
Author Approval Feature Name Technique Evidence Comment Annotated
Person Approved ABE-0012316 ilvE lambda repressor assay Doodle - bnumber: b3770 Oct 2003
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3947484 to 3958413
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0174109hdfRCDScomplement39471283947967Upstream
ABE-0285736maoSmisc_featureforward39480353948051Upstream
ABE-0012298maoPCDSforward39480863948424Upstream
ABE-0012300yifBCDScomplement39484493949969Upstream
ABE-0012307ilvLCDSforward39503223950420Upstream
ABE-0285213ilvXCDSforward39505073950557Upstream
ABE-0012309ilvG_1CDSpforward39505603951543Upstream
ABE-0174552ilvGpseudogeneforward39505603952204Upstream
ABE-0012311ilvG_2CDSpforward39516233952204Upstream
ABE-0012313ilvMCDSforward39522013952464Upstream
ABE-0012316ilvECDSforward39524843953413Matches
ABE-0012318ilvDCDSforward39534783955328Downstream
ABE-0012321ilvACDSforward39553313956875Downstream
ABE-0285637repeat_regionforward39568843956909Downstream
ABE-0012323ilvYCDScomplement39569273957820Downstream
ABE-0012331ilvCCDSforward39579703959445Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.