Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012318 (ilvD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012318 showshow history
Names
ilvD JW5605 ECK3763 b3771
Product
dihydroxyacid dehydratase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3953478 3955328 1851 617
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001429
EnteroFam0012318: Trusted threshold=1754.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000581 (IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase) Apr 2008
Automated Process Approved IPR004404 (IPR004404 Dihydroxy-acid dehydratase) Apr 2008
Automated Process Approved IPR037237 (IPR037237 IlvD/EDD, N-terminal domain) Jul 2018
Automated Process Approved PF00920 (PF00920 Dehydratase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009082 branched-chain amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004404
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000581
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004160 dihydroxy-acid dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004404
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000581
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name ilvD Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3763 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5605 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3771 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product dihydroxyacid dehydratase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name dihydroxyacid dehydratase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012318: Trusted threshold=1754.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001429
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR037237 IlvD/EDD, N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR037237
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004404 Dihydroxy-acid dehydratase Protein Sequence Similarity - InterPro Domain: IPR004404
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase Protein Sequence Similarity - InterPro Domain: IPR000581
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00920 Dehydratase family Protein Sequence Similarity - PFAM Model Name: PF00920
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 4.2.1.9 Published Annotation - Swiss-Prot Accession Number: P05791 Feb 2006
Person Approved MultiFun 1.5.1.18 (metabolism; building block biosynthesis; amino acids; isoleucine/valine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948277 Published Annotation - Entrez Gene Database ID: 948277
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P05791 Published Annotation - Swiss-Prot Accession Number: P05791 Jan 2005
Automated Process Approved db xref EcoGene:EG10496 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P05791 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012318 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:48994964 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Isoleucine, Valine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved function 1.5.1.18 metabolism; building block biosynthesis; amino acids; isoleucine/valine Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAT48208.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved sequence correction version m56: frameshift error corrected, altering N-term. Experimental - GenBank Accession Number: AG613320
Reference: Escherichia coli 		May 2004
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009082 branched-chain amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004404
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000581
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004160 dihydroxy-acid dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004404
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000581
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001429 ilvD CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000830 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000255 ilvD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000340 ilvD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000119 ilvD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000915 ilvD CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002353 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002423 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129870 ilvD CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105268 ilvD CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104717 ilvD CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000241 ilvD CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004041 ilvD CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004509 ilvD_6 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000495 ilvD_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004547 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014944 ilvD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004030 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000126 ilvD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296469 ilvD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000232 ilvD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000208 ilvD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001654 ilvD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007934 ilvD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004006 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007278 ilvD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003814 ilvD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000413 ilvD CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010458 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009585 ilvD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006184 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080884 ilvD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004186 ilvD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000279 ilvD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009731 ilvD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010091 ilvD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004331 ilvD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008715 ilvD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002583 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008534 ilvD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007047 ilvD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007238 ilvD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009832 ilvD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010038 ilvD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008287 ilvD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007850 ilvD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005636 ilvD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007477 ilvD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009707 ilvD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008703 ilvD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006917 ilvD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028908 ilvD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009680 ilvD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008674 ilvD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004386 CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003583 ilvD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004530 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004451 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004354 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004337 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178456 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004132 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004133 ilvD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134789 ilvD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004741 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004336 ilvD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003811 ilvD CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000909 ilvD CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004318 ilvD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002274 ilvD CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008864 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002989 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000494 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003109 ilvD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000871 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003934 ilvD CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000220 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011567 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000627 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288344 ilvD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006866 ilvD CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064557 ilvD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002495 ilvD CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001151 ilvD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003468 ilvD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009319 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147466 ilvD CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005135 ilvD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008295 ilvD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003930 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004463 ilvD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008538 ilvD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012249 ilvD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010782 ilvD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007648 ilvD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008592 ilvD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008531 ilvD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007497 ilvD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008469 ilvD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007683 ilvD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008539 ilvD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008884 ilvD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003781 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003741 ilvD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004869 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008713 ilvD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008392 ilvD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008181 ilvD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007575 ilvD CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112724 ilvD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085116 ilvD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004707 ilvD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102043 ilvD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005259 ilvD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009091 ilvD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008644 ilvD CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001106 ilvD CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267997 ilvD CDS
Person Approved Go view Shigella boydii 227 ADV-0004124 ilvD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009567 ilvD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007474 ilvD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004488 ilvD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075171 ilvD CDS
Person Approved Go view Shigella flexneri 301 ABT-0090060 ilvD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003962 ilvD CDS
Person Approved Go view Shigella sonnei 046 ADD-0004295 ilvD CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000029 VC0028 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000573 ilvD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003172 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000478 ilvD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003555 ilvD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003600 ilvD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003491 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241820 ilvD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004590 ilvD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000160 ilvD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007696 ilvD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003487 ilvD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128410 ilvD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005976 ilvD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006426 ilvD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002129 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009113 ilvD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007189 ilvD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029938 ilvD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006873 ilvD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000092 ilvD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004211 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008354 ilvD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004088 ilvD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000151 ilvD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000169 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004818 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000429 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000711 ilvD CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21444mutantTn5 InsertionRequest the StrainABE-0012318ilvDilvD::Tn5KAN-I-SceI at position 535 in Minus orientation ,+ pKD460Blattner Laboratory
FB21445mutantTn5 InsertionRequest the StrainABE-0012318ilvDilvD::Tn5KAN-I-SceI at position 535 in Minus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3948478 to 3960328
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012300yifBCDScomplement39484493949969Upstream
ABE-0012307ilvLCDSforward39503223950420Upstream
ABE-0285213ilvXCDSforward39505073950557Upstream
ABE-0012309ilvG_1CDSpforward39505603951543Upstream
ABE-0174552ilvGpseudogeneforward39505603952204Upstream
ABE-0012311ilvG_2CDSpforward39516233952204Upstream
ABE-0012313ilvMCDSforward39522013952464Upstream
ABE-0012316ilvECDSforward39524843953413Upstream
ABE-0012318ilvDCDSforward39534783955328Matches
ABE-0012321ilvACDSforward39553313956875Downstream
ABE-0285637repeat_regionforward39568843956909Downstream
ABE-0012323ilvYCDScomplement39569273957820Downstream
ABE-0012331ilvCCDSforward39579703959445Downstream
ABE-0012334ppiCCDScomplement39595323959813Downstream
ABE-0012338yifN_2CDSpcomplement39600123960287Downstream
ABE-0285144yifNpseudogenecomplement39600123960460Downstream
ABE-0012340yifN_1CDSpcomplement39602423960460Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.