Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012331 (ilvC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012331 showshow history
Names
ilvC JW3747 ECK3766 ilvA b3774
Product
ketol-acid reductoisomerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3957970 3959445 1476 492
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001432
EnteroFam0012331: Trusted threshold=1490; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR013023 (IPR013023 Ketol-acid reductoisomerase) Apr 2008
Automated Process Approved IPR014359 (IPR014359 Ketol-acid reductoisomerase, prokaryotic) Apr 2008
Automated Process Approved IPR008927 (IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily) Apr 2008
Automated Process Approved IPR000506 (IPR000506 Ketol-acid reductoisomerase, C-terminal) Apr 2008
Automated Process Approved IPR013116 (IPR013116 Ketol-acid reductoisomerase, N-terminal) Apr 2008
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF07991 (PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain) Jul 2018
Automated Process Approved PF01450 (PF01450 Acetohydroxy acid isomeroreductase, catalytic domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009082 branched-chain amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013023
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000506, IPR013023, IPR008927
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004455 ketol-acid reductoisomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000506
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013023
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name ilvC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ilvA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW3747 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3766 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3774 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product ketol-acid reductoisomerase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name ketol-acid reductoisomerase, NAD(P)-binding Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name ketol-acid reductoisomerase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012331: Trusted threshold=1490; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001432
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR013023 Ketol-acid reductoisomerase Protein Sequence Similarity - InterPro Domain: IPR013023
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR008927
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014359 Ketol-acid reductoisomerase, prokaryotic Protein Sequence Similarity - InterPro Domain: IPR014359
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013116 Ketol-acid reductoisomerase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR013116
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000506 Ketol-acid reductoisomerase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR000506
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Protein Sequence Similarity - PFAM Model Name: PF01450
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Protein Sequence Similarity - PFAM Model Name: PF07991
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 1.1.1.86 Published Annotation - Swiss-Prot Accession Number: P05793 Feb 2006
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.5.1.18 (metabolism; building block biosynthesis; amino acids; isoleucine/valine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948286 Published Annotation - Entrez Gene Database ID: 948286
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P05793 Published Annotation - Swiss-Prot Accession Number: P05793 Jan 2005
Automated Process Approved db xref GI:1790210 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P05793 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012331 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10495 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Isoleucine, Valine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note ketol-acid reductoisomerase; GO_component: GO:0005737 - cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76779.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009082 branched-chain amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013023
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000506, IPR013023, IPR008927
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013023
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004455 ketol-acid reductoisomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000506
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001432 ilvC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000827 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000283 ilvC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000434 ilvC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001341 ilvC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000932 ilvC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002357 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002418 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129869 ilvC CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105267 ilvC CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104716 ilvC CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000238 ilvC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004038 ilvC CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004500 ilvC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000491 ilvC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004553 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014951 ilvC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004025 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000122 ilvC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296484 ilvC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000235 ilvC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000211 ilvC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001666 ilvC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007931 ilvC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004009 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007275 ilvC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003817 ilvC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000410 ilvC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010455 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009582 ilvC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006187 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080887 ilvC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004189 ilvC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000282 ilvC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009734 ilvC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010094 ilvC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004334 ilvC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008718 ilvC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002586 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008537 ilvC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007050 ilvC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007241 ilvC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009835 ilvC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010041 ilvC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008284 ilvC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007853 ilvC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005639 ilvC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007480 ilvC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009704 ilvC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008706 ilvC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006920 ilvC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028911 ilvC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009683 ilvC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008677 ilvC CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003507 ilvC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003580 ilvC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004527 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004454 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004351 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004340 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178463 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004135 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004136 ilvC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134792 ilvC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004744 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004339 ilvC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003814 ilvC CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000912 ilvC CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004321 ilvC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002271 ilvC CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008858 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002986 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000491 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003106 ilvC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000874 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003931 ilvC CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000223 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011564 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000623 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288347 ilvC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006863 ilvC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064552 ilvC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002507 ilvC CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001148 ilvC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003462 ilvC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009309 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147431 ilvC CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001005 ilvC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008300 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003927 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004468 ilvC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008543 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012266 ilvC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010767 ilvC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007643 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008597 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008536 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007502 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008474 ilvC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007688 ilvC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008544 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008879 ilvC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003786 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003746 ilvC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004874 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008718 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008387 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008186 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007580 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112712 ilvC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085111 ilvC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004712 ilvC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102064 ilvC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005254 ilvC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009096 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008649 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001112 ilvC CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0268001 ilvC CDS
Person Approved Go view Shigella boydii 227 ADV-0004127 ilvC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009564 ilvC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007471 ilvC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004485 ilvC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075168 ilvC CDS
Person Approved Go view Shigella flexneri 301 ABT-0090063 ilvC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003959 ilvC CDS
Person Approved Go view Shigella sonnei 046 ADD-0004298 ilvC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000173 VC0162 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000583 ilvC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003177 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000495 ilvC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003551 ilvC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003603 ilvC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003146 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241831 ilvC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004598 ilvC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000169 ilvC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007688 ilvC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003496 ilvC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128387 ilvC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005984 ilvC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006434 ilvC CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009105 ilvC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007197 ilvC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029945 ilvC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006881 ilvC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000102 ilvC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004200 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008347 ilvC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004094 ilvC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000159 ilvC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000179 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004812 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000408 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000708 ilvC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21448mutantTn5 InsertionRequest the StrainABE-0012331ilvCilvC::Tn5KAN-I-SceI at position 992 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3952970 to 3964445
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012316ilvECDSforward39524843953413Upstream
ABE-0012318ilvDCDSforward39534783955328Upstream
ABE-0012321ilvACDSforward39553313956875Upstream
ABE-0285637repeat_regionforward39568843956909Upstream
ABE-0012323ilvYCDScomplement39569273957820Upstream
ABE-0012331ilvCCDSforward39579703959445Matches
ABE-0012334ppiCCDScomplement39595323959813Downstream
ABE-0012338yifN_2CDSpcomplement39600123960287Downstream
ABE-0285144yifNpseudogenecomplement39600123960460Downstream
ABE-0012340yifN_1CDSpcomplement39602423960460Downstream
ABE-0012344repCDSforward39606773962698Downstream
ABE-0285638repeat_regionforward39627003962735Downstream
ABE-0012347gppCDScomplement39627453964229Downstream
ABE-0012351rhlBCDScomplement39643653965630Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.