Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012347 (gpp) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012347 showshow history
Names
gpp gppA JW5603 ECK3771 b3779
Product
guanosine pentaphosphatase/exopolyphosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3962745 3964229 1485 495
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003695 (IPR003695 Ppx/GppA phosphatase) Apr 2008
Automated Process Approved PF02541 (PF02541 Ppx/GppA phosphatase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0042594 response to starvation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006793 phosphorus metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gpp Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5603 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym gppA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved synonym ECK3771 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3779 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product guanosine pentaphosphatase/exopolyphosphatase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name guanosine pentaphosphatase; exopolyphosphatase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name guanosine pentaphosphatase, also has exopolyphosphatase activity Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family PF02541 Ppx/GppA phosphatase family Protein Sequence Similarity - PFAM Model Name: PF02541
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003695 Ppx/GppA phosphatase Protein Sequence Similarity - InterPro Domain: IPR003695
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 3.6.1.40 Published Annotation - Swiss-Prot Accession Number: P25552 Feb 2006
Person Uncurated MultiFun 1.8.1 (metabolism; metabolism of other compounds; phosphorous metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.5.3 (cell processes; adaptation to stress; starvation response) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948291 Published Annotation - Entrez Gene Database ID: 948291
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P25552 Published Annotation - Swiss-Prot Accession Number: P25552 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P25552 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012347 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:48994966 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10413 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Global regulatory functions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note guanosine pentaphosphatase; exopolyphosphatase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion; GO_process: GO:0006793 - phosphorus metabolic process; GO_process: GO:0042594 - response to starvation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAT48210.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved sequence correction version m56: R86 to T, L423 to V Experimental - GenBank Accession Number: AG613323
Reference: Escherichia coli 		May 2004
Person Approved sequence correction version m56: R86 to T, L423 to V Experimental - GenBank Accession Number: AG613324
Reference: Escherichia coli 		May 2004
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006793 phosphorus metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0042594 response to starvation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001866 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001779 gpp CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001570 gpp CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002489 gpp CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001390 gpp CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002364 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002413 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000235 gppA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004033 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004494 gppA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000488 gppA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004563 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0014965 gppA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004018 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000119 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296493 gppA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000238 gppA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000214 gppA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001669 gppA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007928 gppA CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007270 gppA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003820 gppA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000407 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010451 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009578 gppA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006191 pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080890 gpp CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004193 gppA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000286 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009738 gppA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010098 gppA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004337 gpp CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008722 gppA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002590 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008541 gppA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007054 gppA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007245 gppA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009839 gppA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010045 gppA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008280 gppA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007857 gppA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005643 gppA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007484 gppA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009700 gppA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008710 gppA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006924 gppA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028915 gpp CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009686 gppA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008681 gppA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004380 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003512 gpp CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003575 gpp CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004523 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004347 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004343 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178466 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004139 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004139 gppA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134796 gpp CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004748 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004342 gppA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003817 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000921 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004328 gppA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002267 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004580 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003253 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000178 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003380 gppA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000595 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000145 gppA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004238 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007905 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003580 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286377 gpp CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007137 gppA CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064545 gppA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002485 gppA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004289 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003454 gppA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009302 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147428 gppA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008306 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003921 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004475 gppA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008546 gppA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012277 gppA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010758 gppA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007640 gppA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008600 gppA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008539 gppA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007508 gppA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008480 gppA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007694 gppA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008547 gppA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008876 gppA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003792 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003752 gppA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004879 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008721 gppA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008384 gppA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008192 gppA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007586 gppA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112700 gppA CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085105 gppA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004717 gppA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102073 gppA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005251 gppA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009100 gppA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008652 gppA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000796 CDS
Person Approved Go view Shigella boydii 227 ADV-0004132 gppA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009560 gppA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007468 gppA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004480 gppA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075164 gppA CDS
Person Approved Go view Shigella flexneri 301 ABT-0090066 gppA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003956 gppA CDS
Person Approved Go view Shigella sonnei 046 ADD-0004304 gpp CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000320 VC0304 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000588 gpp CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001953 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000523 gppA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003542 gppA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003077 gppA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003312 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241853 gppA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004613 gppA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000190 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001815 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000123 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004182 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004108 gppA CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000178 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000208 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004792 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000398 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000705 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3957745 to 3969229
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012323ilvYCDScomplement39569273957820Downstream
ABE-0012331ilvCCDSforward39579703959445Downstream
ABE-0012334ppiCCDScomplement39595323959813Downstream
ABE-0012338yifN_2CDSpcomplement39600123960287Downstream
ABE-0285144yifNpseudogenecomplement39600123960460Downstream
ABE-0012340yifN_1CDSpcomplement39602423960460Downstream
ABE-0012344repCDSforward39606773962698Downstream
ABE-0285638repeat_regionforward39627003962735Downstream
ABE-0012347gppCDScomplement39627453964229Matches
ABE-0012351rhlBCDScomplement39643653965630Upstream
ABE-0012357trxACDSforward39657613966090Upstream
ABE-0285145-35_signalforward39661273966132Upstream
ABE-0285146-10_signalforward39661503966155Upstream
ABE-0285147attenuatorforward39661623966337Upstream
ABE-0285148attenuatorforward39661623966361Upstream
ABE-0285150mRNAforward39661623967719Upstream
ABE-0012362rhoCDSforward39664173967676Upstream
ABE-0285149terminatorforward39676923967719Upstream
ABE-0012366rfeCDSforward39679163969019Upstream
ABE-0012370wzzECDSforward39690313970077Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.