Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012357 (trxA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012357 showshow history
Names
trxA dasC fip JW5856 ECK3773 tsnC fipA b3781
Product
thioredoxin 1
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3965761 3966090 330 110
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001435
EnteroFam0012357: Trusted threshold=305.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR013766 (IPR013766 Thioredoxin domain) Apr 2008
Automated Process Approved IPR015467 (IPR015467 (DEPRECATED) Thioredoxin, core) Apr 2008
Automated Process Approved IPR006662 (IPR006662 (DEPRECATED) Thioredoxin-like subdomain) Apr 2008
Automated Process Approved IPR012335 (IPR012335 (DEPRECATED) Thioredoxin fold) Apr 2008
Automated Process Approved IPR005746 (IPR005746 Thioredoxin) Apr 2008
Automated Process Approved IPR012336 (IPR012336 Thioredoxin-like fold) Apr 2008
Automated Process Approved IPR036249 (IPR036249 Thioredoxin-like superfamily) Jul 2018
Automated Process Approved PF00085 (PF00085 Thioredoxin) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006662 glycerol ether metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005746
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0045454 cell redox homeostasis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006662
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015035 protein-disulfide reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005746
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005746
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name trxA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym tsnC Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK3773 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5856 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym fip Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym fipA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Automated Process Approved synonym dasC Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b3781 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product thioredoxin 1 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name thioredoxin 1 Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name thioredoxin 1, redox factor Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012357: Trusted threshold=305.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001435
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR015467 (DEPRECATED) Thioredoxin, core Protein Sequence Similarity - InterPro Domain: IPR015467
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013766 Thioredoxin domain Protein Sequence Similarity - InterPro Domain: IPR013766
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006662 (DEPRECATED) Thioredoxin-like subdomain Protein Sequence Similarity - InterPro Domain: IPR006662
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012335 (DEPRECATED) Thioredoxin fold Protein Sequence Similarity - InterPro Domain: IPR012335
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012336 Thioredoxin-like fold Protein Sequence Similarity - InterPro Domain: IPR012336
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036249 Thioredoxin-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036249
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00085 Thioredoxin Protein Sequence Similarity - PFAM Model Name: PF00085
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005746 Thioredoxin Protein Sequence Similarity - InterPro Domain: IPR005746
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 1.6.15.2 (metabolism; macromolecules (cellular constituent) biosynthesis; large molecule carriers; thioredoxin, glutaredoxin) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87082331 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AA25 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948289 Published Annotation - Entrez Gene Database ID: 948289
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AA25 Published Annotation - Swiss-Prot Accession Number: P0AA25 Jan 2006
Automated Process Approved db xref EcoGene:EG11031 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012357 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Thioredoxin, glutaredoxin, glutathione Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved protein id AAC76786.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0045454 cell redox homeostasis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006662
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006662 glycerol ether metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005746
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005746
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015035 protein-disulfide reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005746
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001435 trxA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000823 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000150 trxA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000220 trxA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001023 trxA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000709 trxA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002366 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002411 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129867 trxA CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105265 trxA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104714 trxA CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000233 trxA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004031 trxA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004492 trxA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000486 trxA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004565 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014967 trxA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004016 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000117 trxA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296500 trxA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000240 trxA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000216 trxA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001671 trx CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007926 trx CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004015 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007268 trx CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0005390 CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000405 trxA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010449 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009576 trx CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006193 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080892 trxA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004195 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000288 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009740 trx CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010100 trx CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004339 trxA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008725 trx CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002592 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008543 trx CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007056 trx CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007247 trx CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009841 trx CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010047 trx CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008278 trx CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007859 trx CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005645 trx CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007486 trx CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009698 trx CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008712 trx CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006926 trx CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028917 trxA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009688 trxA_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008683 trx CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004378 trxA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003514 trxA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003573 trxA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004520 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004461 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004344 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004345 trxA CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178469 trxA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004141 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004141 trx CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134798 trxA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004750 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004344 trxA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003819 trxA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000923 trxA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004330 trxA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002265 trxA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004582 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003255 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000176 trxA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003382 trxA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000593 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000147 trxA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004236 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007907 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003582 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0286379 trxA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007139 trxA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064543 trxA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002494 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001147 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003452 trxA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009300 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147424 trxA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005321 trx-2 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008308 trx CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003919 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004477 trxA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008548 trx CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012286 trxA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010750 trxA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007638 trx CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008602 trx CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008541 trx CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007510 trx CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008482 trx CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007696 trx CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008549 trx CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008874 trx CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003795 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003754 trxA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004881 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008723 trx CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008382 trx CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008194 trx CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007588 trx CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112692 trxA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085103 trxA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004719 trxA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102078 trxA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005249 trx CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009102 trx CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008654 trx CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000794 trxA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263957 trxA CDS
Person Approved Go view Shigella boydii 227 ADV-0004134 trxA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009558 trx CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007466 trx CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004478 trxA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075161 trxA CDS
Person Approved Go view Shigella flexneri 301 ABT-0090068 trxA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003954 trxA CDS
Person Approved Go view Shigella sonnei 046 ADD-0004306 trxA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000322 VC0306 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000472 trxA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000592 trxA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001951 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000529 fipA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003540 fipA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003079 trxA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003314 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241855 trxA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004615 trx CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000193 trxA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007668 trx CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003512 trxA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128344 trxA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006003 trx CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006452 trx CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009086 trx CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007217 trx CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029961 trxA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006899 trx CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000126 trxA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004180 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008329 trx CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004110 trx CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000180 trxA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000210 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004790 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000386 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000703 trxA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3960761 to 3971090
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012344repCDSforward39606773962698Upstream
ABE-0285638repeat_regionforward39627003962735Upstream
ABE-0012347gppCDScomplement39627453964229Upstream
ABE-0012351rhlBCDScomplement39643653965630Upstream
ABE-0012357trxACDSforward39657613966090Matches
ABE-0285145-35_signalforward39661273966132Downstream
ABE-0285146-10_signalforward39661503966155Downstream
ABE-0285147attenuatorforward39661623966337Downstream
ABE-0285148attenuatorforward39661623966361Downstream
ABE-0285150mRNAforward39661623967719Downstream
ABE-0012362rhoCDSforward39664173967676Downstream
ABE-0285149terminatorforward39676923967719Downstream
ABE-0012366rfeCDSforward39679163969019Downstream
ABE-0012370wzzECDSforward39690313970077Downstream
ABE-0012372wecBCDSforward39701333971263Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.