Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012370 (wzzE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012370 showshow history
Names
wzzE metNSt yifC wzz(ECA) wzz JW5601 ECK3777 b3785
Product
Enterobacterial Common Antigen (ECA) polysaccharide chain length modulator
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3969031 3970077 1047 349
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001438
EnteroFam0012370: Trusted threshold=889.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003856 (IPR003856 Polysaccharide chain length determinant N-terminal domain) Apr 2008
Automated Process Approved PF02706 (PF02706 Chain length determinant protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009246 enterobacterial common antigen biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009103 lipopolysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003856
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003856
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name wzzE Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym wzz Published Annotation - PubMed ID: 10515954
Reference: Escherichia coli K-12 AB1133 		Jul 2006
Person Uncurated synonym wzz(ECA) Published Annotation - PubMed ID: 9004408 Jul 2006
Automated Process Approved synonym yifC Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW5601 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym metNSt Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK3777 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3785 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product Enterobacterial Common Antigen (ECA) polysaccharide chain length modulator Experimental - PubMed ID: 10515954
Reference: Escherichia coli K-12 AB1133 		Jul 2006
Person Approved alternate product name modulator of enterobacterial common antigen (ECA) polysaccharide chain length Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012370: Trusted threshold=889.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001438
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF02706 Chain length determinant protein Protein Sequence Similarity - PFAM Model Name: PF02706
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003856 Polysaccharide chain length determinant N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR003856
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 1.6.4 (metabolism; macromolecules (cellular constituent) biosynthesis; enterobacterial common antigen (surface glycolipid)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 3.1.4 (regulation; type of regulation; regulation level unknown) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11295 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012370 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AG00 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:944815 Published Annotation - Entrez Gene Database ID: 944815
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:87082332 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AG00 Published Annotation - Swiss-Prot Accession Number: P0AG00 Jan 2006
Automated Process Approved function 6.3 cell structure; surface antigens (ECA, O antigen of LPS) Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function 1.6.4 metabolism; macromolecules (cellular constituent) biosynthesis; enterobacterial common antigen (surface glycolipid) Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative transport; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note modulator of enterobacterial common antigen (ECA) polysaccharide chain length; GO_component: GO:0019866 - organelle inner membrane; GO_function: GO:0042280 - cell surface antigen activity, host-interacting; GO_process: GO:0009246 - enterobacterial common antigen biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76790.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 9.82
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009103 lipopolysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003856
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009246 enterobacterial common antigen biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003856
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001438 wzzE CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001864 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001452 wzzE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001364 wzzE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001392 wzzE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001560 wzzE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002369 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002408 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000230 wzzE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004027 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004489 wzzE CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000483 wzzE CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004569 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014972 wzzE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004013 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000114 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296515 wzzE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000243 wzzE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000219 wzzE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001675 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007921 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004018 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007264 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003825 wzzE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000401 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010445 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009572 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006197 WzzE pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080897 wzzE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004199 wzzE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000292 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009744 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010104 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004344 wzzE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008729 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002597 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008547 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007060 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007251 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009845 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010051 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008274 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007863 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005649 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007490 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009694 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008716 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006930 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028922 wzzE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009752 wzzE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008688 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004374 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003518 wzzE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003569 wzzE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004515 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004466 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004339 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004350 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178473 CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004146 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004145 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134802 wzzE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004755 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004350 wzzE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003822 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000926 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004333 wzz CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002262 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003258 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000173 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003385 wzzE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000590 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000150 wzzE CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004233 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007910 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003585 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286384 wzzE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007142 wzz CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064540 wzzE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002503 wzzE CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001145 wzzE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003448 wzzE CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009296 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147417 wzzE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008311 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003916 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004480 wzzE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008551 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012299 wzzE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010737 wzzE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007635 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008605 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008544 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007513 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008485 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007699 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008552 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008871 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003798 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003757 wzzE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004884 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008726 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008379 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008197 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007591 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112687 wzzE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085100 wzzE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004723 wzzE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102084 wzzE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005245 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009105 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008657 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000791 CDS
Person Approved Go view Shigella boydii 227 ADV-0004139 wzzE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009554 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007463 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004473 wzzE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075157 wzzE CDS
Person Approved Go view Shigella flexneri 301 ABT-0090073 wzzE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003950 wzzE CDS
Person Approved Go view Shigella sonnei 046 ADD-0004311 wzzE CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000601 wzzE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001948 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000539 b3785 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003537 wzzE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003082 wzzE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003317 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241869 wzzE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004618 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000196 wzzE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007665 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003515 wzzE CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128325 wzzE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006006 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006455 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002151 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009083 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007220 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029964 wzzE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006902 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000129 wzzE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004177 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008326 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004114 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000183 wzzE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000213 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004787 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000367 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000700 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21452mutantTn5 InsertionRequest the StrainABE-0012370wzzEwzzE::Tn5KAN-I-SceI at position 404 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3964031 to 3975077
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012347gppCDScomplement39627453964229Upstream
ABE-0012351rhlBCDScomplement39643653965630Upstream
ABE-0012357trxACDSforward39657613966090Upstream
ABE-0285145-35_signalforward39661273966132Upstream
ABE-0285146-10_signalforward39661503966155Upstream
ABE-0285147attenuatorforward39661623966337Upstream
ABE-0285148attenuatorforward39661623966361Upstream
ABE-0285150mRNAforward39661623967719Upstream
ABE-0012362rhoCDSforward39664173967676Upstream
ABE-0285149terminatorforward39676923967719Upstream
ABE-0012366rfeCDSforward39679163969019Upstream
ABE-0012370wzzECDSforward39690313970077Matches
ABE-0012372wecBCDSforward39701333971263Downstream
ABE-0012374wecCCDSforward39712603972522Downstream
ABE-0012376rffGCDSforward39725223973589Downstream
ABE-0012379rffHCDSforward39736083974489Downstream
ABE-0012382rffCCDSforward39744673975141Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.