Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012374 (wecC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012374 showshow history
Names
wecC mnaB rff rffD JW5599 ECK3779 b3787
Product
UDP-N-acetyl-D-mannosamine dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3971260 3972522 1263 421
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001440
EnteroFam0012374: Trusted threshold=1105.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001732 (IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal) Apr 2008
Automated Process Approved IPR014026 (IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation) Apr 2008
Automated Process Approved IPR014027 (IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal) Apr 2008
Automated Process Approved IPR014028 (IPR014028 (DEPRECATED) UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding domain) Apr 2008
Automated Process Approved IPR014360 (IPR014360 (DEPRECATED) UDP-glucose/GDP-mannose dehydrogenase) Apr 2008
Automated Process Approved IPR014687 (IPR014687 (DEPRECATED) UDP-N-acetyl-D-mannosaminuronate dehydrogenase) Apr 2008
Automated Process Approved IPR001680 (IPR001680 WD40 repeat) Apr 2008
Automated Process Approved IPR008927 (IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily) Apr 2008
Automated Process Approved IPR017476 (IPR017476 UDP-glucose/GDP-mannose dehydrogenase) Jul 2018
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved IPR036220 (IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily) Jul 2018
Automated Process Approved PF03720 (PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain) Jul 2018
Automated Process Approved PF00984 (PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain) Jul 2018
Automated Process Approved PF03721 (PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014027, IPR014026, IPR001732, IPR017476, IPR008927
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001732
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009246 enterobacterial common antigen biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001732
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001732
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name wecC Published Annotation - PubMed ID: 9004408
Reference: Escherichia coli 		Apr 2020
Person Approved synonym ECK3779 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5599 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym rffD Published Annotation - PubMed ID: 2166030
Reference: Escherichia coli K-12 AB1133 		Jul 2006
Person Uncurated synonym mnaB Published Annotation - PubMed ID: 9004408 Jul 2006
Automated Process Approved synonym rff Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b3787 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product UDP-N-acetyl-D-mannosamine dehydrogenase Published Annotation - PubMed ID: 2166030
Reference: Escherichia coli K-12 AB1133 		Jul 2006
Protein Family
Person Approved EnteroFam EnteroFam0012374: Trusted threshold=1105.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001440
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR014028 (DEPRECATED) UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding domain Protein Sequence Similarity - InterPro Domain: IPR014028
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014360 (DEPRECATED) UDP-glucose/GDP-mannose dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR014360
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation Protein Sequence Similarity - InterPro Domain: IPR014026
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR001732
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014687 (DEPRECATED) UDP-N-acetyl-D-mannosaminuronate dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR014687
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR014027
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001680 WD40 repeat Protein Sequence Similarity - InterPro Domain: IPR001680
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Protein Sequence Similarity - PFAM Model Name: PF03720
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036220
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR017476 UDP-glucose/GDP-mannose dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR017476
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Protein Sequence Similarity - PFAM Model Name: PF00984
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR008927
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Protein Sequence Similarity - PFAM Model Name: PF03721
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 1.1.1.- Published Annotation - Swiss-Prot Accession Number: P27829 Feb 2006
Person Uncurated MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.4 (metabolism; macromolecules (cellular constituent) biosynthesis; enterobacterial common antigen (surface glycolipid)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012374 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:48994968 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948977 Published Annotation - Entrez Gene Database ID: 948977
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P27829 Published Annotation - Swiss-Prot Accession Number: P27829 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P27829 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11452 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Sugar-nucleotide biosynthesis, conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated function catalyzes the conversion of UDP-N-acetylmannosamine to UDP-N-acetylmannosaminuronic acid in the enterobacterial common antigen (ECA) biosynthetic pathway Published Annotation - PubMed ID: 2166030
Reference: Escherichia coli K-12 AB1133 		Jul 2006
Automated Process Approved note UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase; synthesis of enterobacterial common antigen (ECA); GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_function: GO:0042280 - cell surface antigen activity, host-interacting; GO_process: GO:0009246 - enterobacterial common antigen biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAT48212.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved sequence correction version m56: R78 to A Experimental - GenBank Accession Number: AG613326
Reference: Escherichia coli 		May 2004
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014027, IPR014026, IPR001732, IPR017476, IPR008927
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001732
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009246 enterobacterial common antigen biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001732
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001732
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001440 rffD CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000820 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001184 rffD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001122 rffD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001502 rffD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001297 wecC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002371 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002406 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000228 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004025 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004487 wecC CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000481 wecC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004571 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014974 rffD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004011 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000112 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296520 rffD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000245 wecC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000221 wecC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001678 wecC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007919 wecC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004020 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007262 wecC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003827 rffD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000399 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010442 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009570 wecC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006199 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080899 rffD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004201 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000294 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009746 wecC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010106 wecC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004346 rffD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008731 wecC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002599 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008549 wecC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007062 wecC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007253 wecC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009847 wecC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010053 wecC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008272 wecC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007865 wecC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005651 wecC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007492 wecC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009692 wecC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008718 wecC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006932 wecC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028924 rffD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009754 wecC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008690 wecC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004372 wecC CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003520 rffD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003567 rffD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004513 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004468 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004337 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004352 wecC CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178476 wecC CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004148 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004147 wecC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134804 rffD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004757 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004352 rffD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003824 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000928 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004335 wecC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002260 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004585 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003260 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000171 wecC CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003387 wecC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000588 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000152 wecC CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0004231 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007912 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003587 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0286386 rffD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007144 wecC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064538 rffD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002497 wecC CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001144 wecC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003445 rffD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009293 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147413 wecC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008313 wecC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003914 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004482 rffD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008553 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012304 wecC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010730 wecC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007633 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008607 wecC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008546 wecC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007515 wecC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008487 wecC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007701 wecC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008554 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008869 wecC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003800 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003759 rffD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004886 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008728 wecC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008377 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008199 wecC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007593 wecC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112684 rffD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085098 rffD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004725 wecC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102088 rffD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005243 wecC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009107 wecC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008659 wecC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000789 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266813 CDS
Person Approved Go view Shigella boydii 227 ADV-0004141 rffD CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009552 wecC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007461 wecC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004471 rffD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075155 rffD CDS
Person Approved Go view Shigella flexneri 301 ABT-0090075 rffD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003948 wecC CDS
Person Approved Go view Shigella sonnei 046 ADD-0004313 rffD CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000986 VC0918 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000603 rffD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001946 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000544 b3787 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003535 wecC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003084 rffD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003319 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241874 rffD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004620 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000198 rffD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007663 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003517 rffD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128321 rffD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006008 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006457 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002153 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009081 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007222 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029966 rffD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006904 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000131 rffD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004174 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008324 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004116 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000185 rffD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000215 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004784 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000358 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000698 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21453mutantTn5 InsertionRequest the StrainABE-0012374wecCwecC::Tn5KAN-I-SceI at position 558 in Plus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3966260 to 3977522
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0285147attenuatorforward39661623966337Upstream
ABE-0285148attenuatorforward39661623966361Upstream
ABE-0285150mRNAforward39661623967719Upstream
ABE-0012362rhoCDSforward39664173967676Upstream
ABE-0285149terminatorforward39676923967719Upstream
ABE-0012366rfeCDSforward39679163969019Upstream
ABE-0012370wzzECDSforward39690313970077Upstream
ABE-0012372wecBCDSforward39701333971263Overlaps Upstream
ABE-0012374wecCCDSforward39712603972522Matches
ABE-0012376rffGCDSforward39725223973589Overlaps Downstream
ABE-0012379rffHCDSforward39736083974489Downstream
ABE-0012382rffCCDSforward39744673975141Downstream
ABE-0012384wecECDSforward39751463976276Downstream
ABE-0012386wzxECDSforward39762783977528Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.