Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012376 (rffG) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012376 showshow history
Names
rffG rff rmlB JW5598 ECK3780 b3788
Product
dTDP-D-glucose 4,6-dehydratase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3972522 3973589 1068 356
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005888 (IPR005888 dTDP-glucose 4,6-dehydratase) Apr 2008
Automated Process Approved IPR001509 (IPR001509 NAD-dependent epimerase/dehydratase) Apr 2008
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2018
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF16363 (PF16363 GDP-mannose 4,6 dehydratase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009243 O antigen biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009225 nucleotide-sugar metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005888
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0044237 cellular metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009246 enterobacterial common antigen biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009435 NAD biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008460 dTDP-glucose 4,6-dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005888
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rffG Published Sequence Analysis - PubMed ID: 7559340
Reference: Escherichia coli K-12 W3110 		Jul 2006
Automated Process Approved synonym rff Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym rmlB Published Annotation - PubMed ID: 9004408 Jul 2006
Person Approved synonym JW5598 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3780 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3788 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product dTDP-D-glucose 4,6-dehydratase Experimental - PubMed ID: 11380254
Reference: Escherichia coli K-12 W3110 		Jul 2006
Person Approved alternate product name dTDP-glucose oxidoreductase Experimental - PubMed ID: 7559340
Reference: Escherichia coli K-12 W3110 		Jul 2006
Protein Family
Automated Process Approved protein family PF16363 GDP-mannose 4,6 dehydratase Protein Sequence Similarity - PFAM Model Name: PF16363
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001509 NAD-dependent epimerase/dehydratase Protein Sequence Similarity - InterPro Domain: IPR001509
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005888 dTDP-glucose 4,6-dehydratase Protein Sequence Similarity - InterPro Domain: IPR005888
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 4.2.1.46 Experimental - PubMed ID: 11380254
Reference: Escherichia coli K-12 W3110 		Jul 2006
Person Approved MultiFun 1.6.4 (metabolism; macromolecules (cellular constituent) biosynthesis; enterobacterial common antigen (surface glycolipid)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.3.1 (metabolism; macromolecules (cellular constituent) biosynthesis; lipopolysaccharide; O antigen) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.3.7 (metabolism; building block biosynthesis; cofactor, small molecule carrier; nicotinamide adenine dinucleotide) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P27830 Published Annotation - Swiss-Prot Accession Number: P27830 Jan 2005
Automated Process Approved db xref GeneID:948300 Published Annotation - Entrez Gene Database ID: 948300
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P27830 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11453 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012376 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:48994969 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function 6.3 cell structure; surface antigens (ECA, O antigen of LPS) Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Sugar-nucleotide biosynthesis, conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved function catalyzes the conversion of dTDP-glucose into dTDP-4-keto-6-deoxyglucose in the enterobacterial common antigen (ECA) pathway Published Annotation - PubMed ID: 11601973
Reference: Escherichia coli K-12 W3110 		Jul 2006
Automated Process Approved function 1.6.4 metabolism; macromolecules (cellular constituent) biosynthesis; enterobacterial common antigen (surface glycolipid) Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_function: GO:0042280 - cell surface antigen activity, host-interacting; GO_process: GO:0009243 - O antigen biosynthetic process; GO_process: GO:0009246 - enterobacterial common antigen biosynthetic process; GO_process: GO:0009435 - NAD biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAT48213.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved sequence correction version m56: C314 to W, V315 to L Experimental - GenBank Accession Number: AG613327
Reference: Escherichia coli 		May 2004
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009243 O antigen biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009225 nucleotide-sugar metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005888
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0044237 cellular metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009246 enterobacterial common antigen biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009435 NAD biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008460 dTDP-glucose 4,6-dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005888
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000144 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000051 rffG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000051 rffG CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000068 rffG CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000072 rffG CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002372 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002405 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004486 rffG CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007809 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0020463 rffG CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001297 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001679 rfbB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007918 rfbB2 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004021 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007261 rfbB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003828 rffG CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000398 rffG CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010441 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009569 rfbB2 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006200 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080900 rffG CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004202 rfbB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000295 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009747 rfbB2 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010107 rfbB2 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004347 rffG CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008732 rfbB1 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002600 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008550 rfbB2 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007063 rfbB2 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007254 rfbB2 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009848 rfbB2 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010054 rfbB2 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008271 rfbB2 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007866 rfbB2 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005652 rfbB2 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007493 rfbB2 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009691 rfbB2 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008719 rfbB2 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006933 rfbB2 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028925 rffG CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009755 rffG CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008691 rfbB2 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004371 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003521 rffG CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003566 rffG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004512 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004469 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004336 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004353 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004149 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004148 rfbB2 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134805 rffG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004758 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004353 rffG CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000929 rffG CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004336 rmlB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008270 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000170 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003388 rffG CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000587 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000153 rffG CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003588 CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064537 rffG CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002496 rffG CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001143 rffG CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003444 rffG CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009292 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005476 rfbB-2 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008314 rfbB2 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003913 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004483 rffG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008554 rfbB2 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012309 rffG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010728 rffG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007632 rfbB2 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008608 rfbB2 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008547 rfbB2 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007516 rfbB2 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008488 rfbB2 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007702 rfbB2 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008555 rfbB2 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008868 rfbB2 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003801 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003760 rffG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004887 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008729 rfbB2 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008376 rfbB2 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008200 rfbB2 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007594 rfbB2 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112682 rffG CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085097 rffG CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004726 rffG CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102091 rffG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005242 rfbB2 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009108 rfbB2 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008660 rfbB2 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000788 rffG CDS
Person Approved Go view Shigella boydii 227 ADV-0004142 rffG CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007460 rfbB2 CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0005598 rffG pseudogene
Person Approved Go view Shigella flexneri 2457T ABQ-0075154 rffG CDS
Person Approved Go view Shigella flexneri 301 ABT-0090076 rffG CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003947 rffG CDS
Person Approved Go view Shigella sonnei 046 ADD-0004314 rffG CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000604 rffG CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001945 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000549 rffG CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003534 rffG CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003085 rffG CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003320 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241875 rffG CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004621 rfbB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000200 rffG CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007662 rfbB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003518 rffG CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128319 rffG CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006009 rfbB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006458 rfbB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002154 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009080 rfbB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007223 rfbB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029967 rffG CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006905 rfbB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000133 rffG CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004173 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008323 rfbB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004117 rfbB CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000186 rffG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000217 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004783 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3967522 to 3978589
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0285150mRNAforward39661623967719Upstream
ABE-0012362rhoCDSforward39664173967676Upstream
ABE-0285149terminatorforward39676923967719Upstream
ABE-0012366rfeCDSforward39679163969019Upstream
ABE-0012370wzzECDSforward39690313970077Upstream
ABE-0012372wecBCDSforward39701333971263Upstream
ABE-0012374wecCCDSforward39712603972522Overlaps Upstream
ABE-0012376rffGCDSforward39725223973589Matches
ABE-0012379rffHCDSforward39736083974489Downstream
ABE-0012382rffCCDSforward39744673975141Downstream
ABE-0012384wecECDSforward39751463976276Downstream
ABE-0012386wzxECDSforward39762783977528Downstream
ABE-0174115wecFCDSforward39775253978604Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.