Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012379 (rffH) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012379 showshow history
Names
rffH JW3763 yifG ECK3781 rmlA rmlA2 b3789
Product
glucose-1-phosphate thymidylyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3973608 3974489 882 294
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005835 (IPR005835 Nucleotidyl transferase domain) Apr 2008
Automated Process Approved IPR005907 (IPR005907 Glucose-1-phosphate thymidylyltransferase, short form) Apr 2008
Automated Process Approved IPR029044 (IPR029044 Nucleotide-diphospho-sugar transferases) Jul 2018
Automated Process Approved PF00483 (PF00483 Nucleotidyl transferase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0045226 extracellular polysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005907
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009243 O antigen biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005835
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009246 enterobacterial common antigen biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008879 glucose-1-phosphate thymidylyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005907
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016779 nucleotidyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005835
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name rffH Published Sequence Analysis - PubMed ID: 7559340
Reference: Escherichia coli K-12 W3110 		Jul 2006
Person Approved synonym rmlA2 Published Annotation - Swiss-Prot Accession Number: P61887 Jan 2005
Person Approved synonym rmlA Published Sequence Analysis - PubMed ID: 9004408 Jan 2005
Person Approved synonym JW3763 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yifG Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK3781 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3789 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product glucose-1-phosphate thymidylyltransferase Experimental - PubMed ID: 7559340
Reference: Escherichia coli K-12 W3110 		Jul 2006
Person Uncurated alternate product name dTDP-glucose pyrophosphorylase Published Annotation - Swiss-Prot Accession Number: P61887
Reference: Escherichia coli K-12 MG1655 		Jul 2006
Protein Family
Automated Process Approved protein family IPR029044 Nucleotide-diphospho-sugar transferases Protein Sequence Similarity - InterPro Domain: IPR029044
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00483 Nucleotidyl transferase Protein Sequence Similarity - PFAM Model Name: PF00483
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005835 Nucleotidyl transferase domain Protein Sequence Similarity - InterPro Domain: IPR005835
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005907 Glucose-1-phosphate thymidylyltransferase, short form Protein Sequence Similarity - InterPro Domain: IPR005907
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 2.7.7.- Published Annotation - Database Name: EC2GO: GO:0016779
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 2.7.7.24 Published Annotation - Swiss-Prot Accession Number: P61887 Feb 2006
Person Approved MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 1.6.3.1 (metabolism; macromolecules (cellular constituent) biosynthesis; lipopolysaccharide; O antigen) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 1.6.4 (metabolism; macromolecules (cellular constituent) biosynthesis; enterobacterial common antigen (surface glycolipid)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012379 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P61887 Published Annotation - Swiss-Prot Accession Number: P61887 Jan 2005
Automated Process Approved db xref EcoGene:EG11454 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948299 Published Annotation - Entrez Gene Database ID: 948299
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1790224 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function 6.1 cell structure; membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function 6.3 cell structure; surface antigens (ECA, O antigen of LPS) Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Sugar-nucleotide biosynthesis, conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated function catalyzes the formation of dTDP-D-glucose from dTTP and D-glucose-1-phosphate in the enterobacterial common antigen (ECA) pathway Published Annotation - PubMed ID: 12171937
Reference: Escherichia coli 		Jul 2006
Automated Process Approved function 1.6.3.1 metabolism; macromolecules (cellular constituent) biosynthesis; lipopolysaccharide; O antigen Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function 1.6.4 metabolism; macromolecules (cellular constituent) biosynthesis; enterobacterial common antigen (surface glycolipid) Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated molecular interaction forms tetrameric structure consisting of a dimer of dimers; for thymidylyltransferase activity, by dynamic light scattering Experimental - PubMed ID: 12171937
Reference: Escherichia coli 		Jul 2006
Person Uncurated molecular interaction binds Mg2+:D108 and D223; for thymidylyltransferase activity, by X-ray diffraction Experimental - PubMed ID: 12171937
Reference: Escherichia coli 		Jul 2006
Person Uncurated molecular interaction binds deoxythymidine triphosphate (dTTP):G8_L14, K23, Q24, Q80_G85, and E194; binding does not require the presence of Mg2+, by X-ray diffraction Experimental - PubMed ID: 12171937
Reference: Escherichia coli 		Jul 2006
Automated Process Approved note GO_function: GO:0042280 - cell surface antigen activity, host-interacting; GO_process: GO:0009243 - O antigen biosynthetic process; GO_process: GO:0009246 - enterobacterial common antigen biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76794.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated structure PDB:1MC3 wt, whole protein, co-purified with Mg2+ and dTTP:2.6 A; X-ray diffraction Experimental - PubMed ID: 12171937
Reference: Escherichia coli 		Jul 2006
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005835
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009246 enterobacterial common antigen biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0045226 extracellular polysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005907
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009243 O antigen biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008879 glucose-1-phosphate thymidylyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005907
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016779 nucleotidyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005835
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000091 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000065 rfbA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000064 rfbA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000073 rfbA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000082 rfbA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003617 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004376 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001238 rfbA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004485 rffH CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007808 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020462 rffH CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001298 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296533 rmlA2 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000247 rmlA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000223 rmlA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001680 rfbA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007917 rfbA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004022 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007260 rfbA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003829 rffH CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000397 rffH CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010440 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009568 rfbA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006201 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080901 rffH CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004203 rfbA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000296 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009748 rfbA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010108 rfbA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004348 rffH CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008733 rfbA2 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002601 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008551 rfbA1 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007064 rfbA1 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007255 rfbA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009849 rfbA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010055 rfbA1 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008270 rfbA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007867 rfbA1 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005653 rfbA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007494 rfbA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009690 rfbA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008720 rfbA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006934 rfbA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028926 rffH CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009756 rffH CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008692 rfbA1 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004370 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003522 rffH CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003565 rffH CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004511 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004470 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004335 rfbA CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004354 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178479 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004150 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004149 rfbA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134806 rffH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004759 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004354 rffH CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001384 rfbA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000930 rffH CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004337 rmlA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008271 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000169 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003389 rmlA2 CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000586 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000154 rmlA2 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003589 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289519 CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061698 rfbA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003684 rfbA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004174 rfbA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006023 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001107 rfbA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003912 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004484 rffH CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008867 rfbA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003802 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003761 rffH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004888 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008201 rfbA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007595 rfbA1 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112680 rffH CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085096 rffH CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0285050 rffH pseudogene
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005241 rfbA1 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000787 rffH CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266809 rfbA CDS
Person Approved Go view Shigella boydii 227 ADV-0004143 rffH CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009550 rfbA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007459 rfbA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004469 rffH CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075153 rffH CDS
Person Approved Go view Shigella flexneri 301 ABT-0090077 rffH CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003946 rffH CDS
Person Approved Go view Shigella sonnei 046 ADD-0004315 rffH CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000605 rffH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001944 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000551 rffH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003533 rffH CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003086 rffH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003321 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241876 rffH CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004622 rfbA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000201 rffH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007661 rfbA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0004494 rffH CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128317 rffH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006010 rfbA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006459 rfbA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002155 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009079 rfbA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007224 rfbA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029968 rffH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006906 rfbA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000134 rffH CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004172 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008322 rfbA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004118 rfbA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000187 rffH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000218 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004782 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0016302 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003160 rfbA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21454mutantTn5 InsertionRequest the StrainABE-0012379rffHrffH::Tn5KAN-I-SceI at position 368 in Plus orientation ,- pKD465Blattner Laboratory
FB21455mutantTn5 InsertionRequest the StrainABE-0012379rffHrffH::Tn5KAN-I-SceI at position 368 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3968608 to 3979489
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012366rfeCDSforward39679163969019Upstream
ABE-0012370wzzECDSforward39690313970077Upstream
ABE-0012372wecBCDSforward39701333971263Upstream
ABE-0012374wecCCDSforward39712603972522Upstream
ABE-0012376rffGCDSforward39725223973589Upstream
ABE-0012379rffHCDSforward39736083974489Matches
ABE-0012382rffCCDSforward39744673975141Overlaps Downstream
ABE-0012384wecECDSforward39751463976276Downstream
ABE-0012386wzxECDSforward39762783977528Downstream
ABE-0174115wecFCDSforward39775253978604Downstream
ABE-0012392wzyECDSforward39786013979953Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.