Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012382 (rffC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012382 showshow history
Names
rffC rff yifH wecD JW5597 ECK3782 b3790
Product
dTDP-fucosamine acetyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3974467 3975141 675 225
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001441
EnteroFam0012382: Trusted threshold=460.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR012752 (IPR012752 dTDP-fucosamine acetyltransferase WecD) Apr 2008
Automated Process Approved IPR002110 (IPR002110 Ankyrin repeat) Apr 2008
Automated Process Approved IPR000182 (IPR000182 GNAT domain) Apr 2008
Automated Process Approved IPR016181 (IPR016181 Acyl-CoA N-acyltransferase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0009246 enterobacterial common antigen biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR012752
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000182
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008080 N-acetyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000182
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rffC Published Annotation - PubMed ID: 8366065
Reference: Escherichia coli K-12 AB1133 		Jul 2006
Person Approved synonym JW5597 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym wecD Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved synonym rff Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym yifH Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK3782 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3790 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product dTDP-fucosamine acetyltransferase Published Annotation - PubMed ID: 16855251
Reference: Escherichia coli CFT073 (UPEC) 		Jul 2006
Person Approved alternate product name dTDP-4-amino-4,6-dideoxy-D-glucose acetyltransferase Published Annotation - PubMed ID: 10515954
Reference: Escherichia coli K-12 		Jul 2006
Person Approved alternate product name putative acyltransferase, lipopolysaccharide biosynthesis protein Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012382: Trusted threshold=460.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001441
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR000182 GNAT domain Protein Sequence Similarity - InterPro Domain: IPR000182
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012752 dTDP-fucosamine acetyltransferase WecD Protein Sequence Similarity - InterPro Domain: IPR012752
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002110 Ankyrin repeat Protein Sequence Similarity - InterPro Domain: IPR002110
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR016181 Acyl-CoA N-acyltransferase Protein Sequence Similarity - InterPro Domain: IPR016181
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 2.3.1.- Published Annotation - Database Name: EC2GO: GO:0008080
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated EC number 2.3.-.- Protein Sequence Similarity - InterPro Domain: IPR000182
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Person Uncurated MultiFun 1.6.3.2 (metabolism; macromolecules (cellular constituent) biosynthesis; lipopolysaccharide; core region) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved comment the coordinates of rffC have been changed from those reported in the GenBank entry (GBAN:U00096.2) to correspond to a GeneMark.hmm prediction using multiple models, adding 43 codons to the N-terminus Unpublished Sequence Analysis - Author Name, Email; Comment: Eric Neeno-Eckwall, ecneenoeckwa@wisc.edu Jul 2006
Person Approved db xref UniProtKB:P27832 Published Annotation - Swiss-Prot Accession Number: P27832 Jan 2005
Automated Process Approved db xref GeneID:948298 Published Annotation - Entrez Gene Database ID: 948298
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P27832 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012382 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11455 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:145693203 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function catalyzes the transfer of an acetyl group from acetyl-CoA to dTDP-4-amino-4,6-dideoxy-D-glucose, yielding dTDP-4-acetamido-4,6-dideoxy-D-glucose in the enterobacterial common antigen (ECA) pathway Published Annotation - PubMed ID: 10515954
Reference: Escherichia coli K-12 		Jul 2006
Automated Process Approved note putative acyltransferase, lipopolysaccharide biosynthesis protein; GO_component: GO:0019866 - organelle inner membrane; GO_function: GO:0042280 - cell surface antigen activity, host-interacting; GO_process: GO:0009244 - lipopolysaccharide core region biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAT48214.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated sequence correction version m56: R187 to A Experimental - GenBank Accession Number: AG613328
Reference: Escherichia coli K-12 MG1655 		Oct 2006
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000182
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0009246 enterobacterial common antigen biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR012752
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008080 N-acetyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000182
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001441 rffC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000819 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001451 rffC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001414 rffC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001542 rffC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001517 rffC CDS
Ortholog
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004024 wecD CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004484 rffC CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000480 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004573 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014975 rffC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004010 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296535 rffC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000224 wecD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001681 wecD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007916 wecD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004023 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007259 wecD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003830 rffC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000396 wecD CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010439 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009567 wecD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006202 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080902 rffC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004204 wecD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000297 wecD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009749 wecD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010109 wecD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004349 rffC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008734 wecD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002602 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008552 wecD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007065 wecD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007256 wecD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009850 wecD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010056 wecD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008269 wecD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007868 wecD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005654 wecD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007495 wecD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009689 wecD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008721 wecD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006935 wecD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028927 rffC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009757 wecD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008693 wecD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004369 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003523 rffC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003564 rffC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004510 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004471 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004334 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004355 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178480 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004151 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004150 wecD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134807 rffC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004760 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004355 rffC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003825 wecD CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004338 wecD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002259 wecD CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004586 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000155 rffC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064536 rffC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002501 rffC CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001142 rffC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003443 rffC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009291 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147409 wecD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008316 wecD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003911 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004485 rffC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008556 wecD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012313 wecD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010724 wecD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007630 wecD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008610 wecD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008549 wecD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007518 wecD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008490 wecD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007704 wecD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008557 wecD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008866 wecD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003803 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003762 rffC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004889 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008731 wecD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008374 wecD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008202 wecD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007596 wecD CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112678 rffC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085095 rffC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004728 wecD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102097 rffC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005240 wecD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009110 wecD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008662 wecD CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000786 wecD CDS
Person Approved Go view Shigella boydii 227 ADV-0004144 rffC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009549 wecD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007458 wecD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004468 rffC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075152 rffC CDS
Person Approved Go view Shigella flexneri 301 ABT-0090078 rffC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003945 wecD CDS
Person Approved Go view Shigella sonnei 046 ADD-0004316 rffC CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000606 rffC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001943 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000553 b3790 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003532 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003087 rffC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003322 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241878 rffC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004623 wecD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000202 rffC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007660 wecD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003519 rffC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128315 rffC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006011 wecD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006460 wecD CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009078 wecD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007225 wecD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029969 rffC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006907 wecD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000135 rffC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004171 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008321 wecD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004119 wecD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000188 rffC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000219 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004781 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000356 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000697 wecD CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3969467 to 3980141
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012370wzzECDSforward39690313970077Upstream
ABE-0012372wecBCDSforward39701333971263Upstream
ABE-0012374wecCCDSforward39712603972522Upstream
ABE-0012376rffGCDSforward39725223973589Upstream
ABE-0012379rffHCDSforward39736083974489Overlaps Upstream
ABE-0012382rffCCDSforward39744673975141Matches
ABE-0012384wecECDSforward39751463976276Downstream
ABE-0012386wzxECDSforward39762783977528Downstream
ABE-0174115wecFCDSforward39775253978604Downstream
ABE-0012392wzyECDSforward39786013979953Downstream
ABE-0012394rffMCDSforward39799563980696Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.