Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012386 (wzxE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012386 showshow history
Names
wzxE yifJ wzx JW3766 ECK3784 b3792
Product
lipid III translocase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3976278 3977528 1251 417
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001443
EnteroFam0012386: Trusted threshold=958.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002797 (IPR002797 Polysaccharide biosynthesis protein) Apr 2008
Automated Process Approved PF01943 (PF01943 Polysaccharide biosynthesis protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0000271 polysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002797
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002797
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0031226 intrinsic component of plasma membrane GO Inferred from Sequence or Structural Similarity - PubMed ID: 12621029
Reference: Escherichia coli K-12 AB1133 		Dec 2006
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name wzxE Published Annotation - PubMed ID: 12621029
Reference: Escherichia coli K-12 AB1133 		Dec 2006
Person Approved synonym ECK3784 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yifJ Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW3766 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym wzx Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b3792 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product lipid III translocase Published Annotation - PubMed ID: 12621029
Reference: Escherichia coli K-12 AB1133 		Dec 2006
Person Approved alternate product name undecaprenyl-pyrophosphoryl-linked trisaccharide translocase Published Annotation - PubMed ID: 16816184
Reference: Escherichia coli K-12 W3110 		Dec 2006
Person Approved alternate product name O-antigen translocase in LPS biosynthesis Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name lipid III flippase Published Annotation - PubMed ID: 16199561
Reference: Escherichia coli K-12 AB1133 		Dec 2006
Protein Family
Person Approved EnteroFam EnteroFam0012386: Trusted threshold=958.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001443
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF01943 Polysaccharide biosynthesis protein Protein Sequence Similarity - PFAM Model Name: PF01943
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002797 Polysaccharide biosynthesis protein Protein Sequence Similarity - InterPro Domain: IPR002797
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 1.6.15.1 (metabolism; macromolecules (cellular constituent) biosynthesis; large molecule carriers; cytochromes) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11486 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012386 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AAA7 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790227 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AAA7 Published Annotation - Swiss-Prot Accession Number: P0AAA7 Jan 2006
Automated Process Approved db xref GeneID:948294 Published Annotation - Entrez Gene Database ID: 948294
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function facilitates the transbilayer movement of lipid III across the cytoplasmic membrane in the Enterobacterial Common Antigen (ECA) pathway Published Annotation - PubMed ID: 12621029
Reference: Escherichia coli K-12 AB1133 		Dec 2006
Automated Process Approved note O-antigen translocase in LPS biosynthesis; GO_process: GO:0017004 - cytochrome complex assembly Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76797.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0000271 polysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002797
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0031226 intrinsic component of plasma membrane GO Inferred from Sequence or Structural Similarity - PubMed ID: 12621029
Reference: Escherichia coli K-12 AB1133 		Dec 2006
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002797
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001443 wzxE CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000817 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001304 wzxE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001221 wzxE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001531 wzxE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001519 wzxE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002375 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002402 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000225 wzxE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004022 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004482 wzxE CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000478 wzxE_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004575 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014977 wzxE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004008 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000109 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296541 wzxE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000250 wzx CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000226 wzxE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001683 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007914 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004025 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007257 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003832 wzxE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000394 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010437 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009565 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006204 WzxE CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080905 wzxE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004206 wzxE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000299 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009751 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010111 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004351 wzxE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008736 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002604 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008554 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007067 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007258 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009852 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010058 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008267 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007870 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005656 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007497 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009687 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008723 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006937 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028929 wzxE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009759 wzxE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008695 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004367 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003525 wzxE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003562 wzxE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004508 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004473 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004332 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004358 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004153 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004152 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134809 wzxE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004762 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004358 wzxE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003827 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000933 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004340 wzx CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002257 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004588 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003264 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000166 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003392 wzxE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000583 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000157 wzxE CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004228 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007915 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003592 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0286389 wzxE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007148 wzx3 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064534 wzxE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002502 wzxE CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001140 wzxE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003441 wzxE CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009289 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147405 wzxE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008318 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003909 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004487 wzxE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008558 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012318 wzxE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010719 wzxE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007628 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008612 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008551 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007520 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008492 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007706 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008559 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008864 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003805 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003764 wzxE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004891 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008733 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008372 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008204 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007598 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112675 wzxE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085093 wzxE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004730 wzxE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102101 wzxE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005238 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009112 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008664 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000784 CDS
Person Approved Go view Shigella boydii 227 ADV-0004146 wzxE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009547 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007456 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004466 wzxE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075150 wzxE CDS
Person Approved Go view Shigella flexneri 301 ABT-0090080 wzxE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003943 wzxE CDS
Person Approved Go view Shigella sonnei 046 ADD-0004318 wzxE CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000608 wzxE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001941 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000558 b3792 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003530 b3792 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003089 wzxE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003324 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241880 wzxE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004625 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000204 wzxE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007658 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003521 wzxE CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128299 wzxE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006013 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006462 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000835 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009076 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007227 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029971 wzxE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006909 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000137 wzxE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004169 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008319 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004121 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000190 wzxE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000221 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004779 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000348 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000695 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21456mutantTn5 InsertionRequest the StrainABE-0012386wzxEwzxE::Tn5KAN-2 at position 325 in Minus orientation ,- pKD465Blattner Laboratory
FB21457mutantTn5 InsertionRequest the StrainABE-0012386wzxEwzxE::Tn5KAN-2 at position 325 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3971278 to 3982528
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012374wecCCDSforward39712603972522Upstream
ABE-0012376rffGCDSforward39725223973589Upstream
ABE-0012379rffHCDSforward39736083974489Upstream
ABE-0012382rffCCDSforward39744673975141Upstream
ABE-0012384wecECDSforward39751463976276Upstream
ABE-0012386wzxECDSforward39762783977528Matches
ABE-0174115wecFCDSforward39775253978604Overlaps Downstream
ABE-0012392wzyECDSforward39786013979953Downstream
ABE-0012394rffMCDSforward39799563980696Downstream
ABE-0012397yifKCDSforward39808873982272Downstream
ABE-0012399argXtRNAforward39823753982451Downstream
ABE-0012401hisRtRNAforward39825093982585Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.