Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012392 (wzyE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012392 showshow history
Names
wzyE rffT JW3769 ECK3786 b3793
Product
Enterobacterial Common Antigen (ECA) polysaccharide chain polymerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3978601 3979953 1353 451
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001444
EnteroFam0012392: Trusted threshold=1077.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR010691 (IPR010691 Probable ECA polymerase WzyE) Apr 2008
Automated Process Approved PF06899 (PF06899 WzyE protein, O-antigen assembly polymerase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009246 enterobacterial common antigen biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010691
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name wzyE Published Annotation - PubMed ID: 12618464
Reference: Escherichia coli K-12 AB1133 		Dec 2006
Person Approved synonym ECK3786 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym rffT Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW3769 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3793 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product Enterobacterial Common Antigen (ECA) polysaccharide chain polymerase Published Annotation - PubMed ID: 16199561
Reference: Escherichia coli K-12 AB1133 		Dec 2006
Protein Family
Person Approved EnteroFam EnteroFam0012392: Trusted threshold=1077.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001444
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF06899 WzyE protein, O-antigen assembly polymerase Protein Sequence Similarity - PFAM Model Name: PF06899
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR010691 Probable ECA polymerase WzyE Protein Sequence Similarity - InterPro Domain: IPR010691
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 1.6.4 (metabolism; macromolecules (cellular constituent) biosynthesis; enterobacterial common antigen (surface glycolipid)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved comment was originally thought to be wecF, encoding 4-alpha-L-fucosyltransferase Published Annotation - Swiss-Prot Accession Number: P27835 Dec 2004
Person Uncurated db xref NCBI_gi:14485184 Published Annotation - GenPept Accession Number: AAK62973 Mar 2005
Person Approved db xref UniProtKB:P27835 Published Annotation - Swiss-Prot Accession Number: P27835 Jan 2005
Automated Process Approved db xref GeneID:948293 Published Annotation - Entrez Gene Database ID: 948293
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P27835 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:2367288 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11457 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012392 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Sugar-nucleotide biosynthesis, conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved function catalyzes the polymerization of ECA trisaccharide units in the production of either the phosphoglyceride-linked or the water-soluble cyclic form of ECA (Enterobacterial Common Antigen) Published Annotation - PubMed ID: 16199561
Reference: Escherichia coli K-12 AB1133 		Dec 2006
Automated Process Approved function 6.3 cell structure; surface antigens (ECA, O antigen of LPS) Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function 1.6.4 metabolism; macromolecules (cellular constituent) biosynthesis; enterobacterial common antigen (surface glycolipid) Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note putative ECA polymerization protein; GO_component: GO:0019866 - organelle inner membrane; GO_function: GO:0042280 - cell surface antigen activity, host-interacting; GO_process: GO:0009246 - enterobacterial common antigen biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76800.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0009246 enterobacterial common antigen biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010691
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001444 wzyE CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000815 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001377 wzyE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001369 wzyE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001944 wzyE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001585 wzyE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002377 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002400 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000223 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004020 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004480 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000476 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004577 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014979 wzyE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004006 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000107 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296545 wzyE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000252 wzy CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000228 wzyE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001685 wzyE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007912 wzyE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004027 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007255 wzyE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003834 wecF CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000392 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010435 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009563 wzyE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006206 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080907 CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004208 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000301 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009753 wzyE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010113 wzyE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004353 wzyE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008739 wzyE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002606 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008556 wzyE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007069 wzyE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007260 wzyE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009854 wzyE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010060 wzyE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008265 wzyE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007872 wzyE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005658 wzyE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007499 wzyE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009685 wzyE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006939 wzyE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028931 CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009761 wzyE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008697 wzyE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004365 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003526 wzyE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003560 wzyE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004506 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004475 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004330 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004360 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004155 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004154 wzyE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134811 wzyE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004764 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004360 wzyE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003829 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000935 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004342 wzy CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002255 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004590 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003266 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000164 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003394 wzyE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000581 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000159 wzyE CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004226 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007917 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003594 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286391 wzyE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007150 wzy CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064532 wzyE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002997 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003208 wzyE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003439 wzyE CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009287 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147401 wzyE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008320 wzyE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003907 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004489 CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008560 wzyE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012323 wecF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010713 wecF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007626 wzyE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008614 wzyE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008553 wzyE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007522 wzyE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008494 wzyE CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007708 wzyE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008561 wzyE CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008862 wzyE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003807 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003766 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004893 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008735 wzyE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008370 wzyE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008206 wzyE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007600 wzyE CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112673 CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085091 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004732 wecF CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102107 CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005236 wzyE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009114 wzyE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008666 wzyE CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000782 CDS
Person Approved Go view Shigella boydii 227 ADV-0004148 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009545 wzyE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007454 wzyE CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004464 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075148 wzyE CDS
Person Approved Go view Shigella flexneri 301 ABT-0090082 CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003941 wecF CDS
Person Approved Go view Shigella sonnei 046 ADD-0004320 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000613 wzyE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001939 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000563 rffT CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003528 rffT CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003091 wzyE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003326 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241894 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004627 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000206 wzyE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007656 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003523 wzyE CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128286 wzyE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006015 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006464 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000837 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009074 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007229 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029973 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006911 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000139 wzyE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004167 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008317 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004123 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000192 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000223 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004777 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000344 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000693 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3973601 to 3984953
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012379rffHCDSforward39736083974489Upstream
ABE-0012382rffCCDSforward39744673975141Upstream
ABE-0012384wecECDSforward39751463976276Upstream
ABE-0012386wzxECDSforward39762783977528Upstream
ABE-0174115wecFCDSforward39775253978604Overlaps Upstream
ABE-0012392wzyECDSforward39786013979953Matches
ABE-0012394rffMCDSforward39799563980696Downstream
ABE-0012397yifKCDSforward39808873982272Downstream
ABE-0012399argXtRNAforward39823753982451Downstream
ABE-0012401hisRtRNAforward39825093982585Downstream
ABE-0012403leuTtRNAforward39826063982692Downstream
ABE-0012405proMtRNAforward39827353982811Downstream
ABE-0012408aslBCDSforward39829583984193Downstream
ABE-0285639repeat_regionforward39842203984323Downstream
ABE-0012411aslACDScomplement39843523986007Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.