Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012394 (rffM) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012394 showshow history
Names
rffM rff wecG JW3770 ECK3787 b3794
Product
UDP-N-acetyl-D-mannosaminuronic acid (ManNAcA) transferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3979956 3980696 741 247
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001445
EnteroFam0012394: Trusted threshold=603.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004629 (IPR004629 Glycosyl transferase WecG/TagA/CpsF) Apr 2008
Automated Process Approved PF03808 (PF03808 Glycosyl transferase WecG/TagA/CpsF family) Jul 2018
Automated Process Uncurated GT26 (GT26 Glycosyl Transferase Family 26) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009246 enterobacterial common antigen biosynthetic process GO Inferred from Mutant Phenotype - PubMed ID: 2166030
Reference: Escherichia coli K-12 AB1133 		Dec 2006
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004629
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rffM Published Annotation - PubMed ID: 2166030
Reference: Escherichia coli K-12 AB1133 		Dec 2006
Person Approved synonym JW3770 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym wecG Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved synonym ECK3787 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym rff Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b3794 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product UDP-N-acetyl-D-mannosaminuronic acid (ManNAcA) transferase Experimental - PubMed ID: 2166030
Reference: Escherichia coli K-12 AB1133 		Dec 2006
Protein Family
Person Approved EnteroFam EnteroFam0012394: Trusted threshold=603.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001445
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF03808 Glycosyl transferase WecG/TagA/CpsF family Protein Sequence Similarity - PFAM Model Name: PF03808
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004629 Glycosyl transferase WecG/TagA/CpsF Protein Sequence Similarity - InterPro Domain: IPR004629
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated protein family GT26 Glycosyl Transferase Family 26 Protein Sequence Similarity - CAZy Model Name: GT26
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.4.1.- Published Annotation - Swiss-Prot Accession Number: P27836 Feb 2006
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 1.6.4 (metabolism; macromolecules (cellular constituent) biosynthesis; enterobacterial common antigen (surface glycolipid)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P27836 Published Annotation - Swiss-Prot Accession Number: P27836 Jan 2005
Automated Process Approved db xref GeneID:948301 Published Annotation - Entrez Gene Database ID: 948301
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P27836 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012394 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:2367289 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11458 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Sugar-nucleotide biosynthesis, conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved function 6.3 cell structure; surface antigens (ECA, O antigen of LPS) Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function catalyzes the transfer of ManNAcA from UDP-ManNAcA to lipid I, forming lipid II in the Enterobacterial Common Antigen (ECA) pathway Published Annotation - PubMed ID: 1730666
Reference: Escherichia coli K-12 AB1133 		Dec 2006
Automated Process Approved function 1.6.4 metabolism; macromolecules (cellular constituent) biosynthesis; enterobacterial common antigen (surface glycolipid) Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note probable UDP-N-acetyl-D-mannosaminuronic acid transferase; synthesis of enterobacterial common antigen (ECA); GO_function: GO:0042280 - cell surface antigen activity, host-interacting; GO_process: GO:0009246 - enterobacterial common antigen biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76801.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004629
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009246 enterobacterial common antigen biosynthetic process GO Inferred from Mutant Phenotype - PubMed ID: 2166030
Reference: Escherichia coli K-12 AB1133 		Dec 2006
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001445 rffM CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000814 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001253 rffM CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001164 rffM CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001342 rffM CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001477 rffM CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002378 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002399 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000222 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004019 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004479 tagA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000475 tagA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004578 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014980 rffM CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004005 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000106 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296550 rffM CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000229 wecG CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001686 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007911 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004028 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007254 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003835 wecG CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000391 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010434 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009562 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006207 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080908 CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004209 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000302 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009754 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010114 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004354 rffM CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008740 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002607 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008557 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007070 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007261 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009855 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010061 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008264 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007873 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005659 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007500 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009684 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008727 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006940 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028932 CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009762 wecG CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008698 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004364 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003527 rffM CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003559 rffM CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004505 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004476 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004329 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004361 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178487 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004156 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004155 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134812 rffM CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004765 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004361 rffM CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003830 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000936 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004343 wecG CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002254 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004592 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003267 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000163 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003395 wecG CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000580 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000160 wecG CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004225 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007918 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003595 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286392 rffM CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007151 wecG CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064531 rffM CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002500 wecG CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001138 wecG CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003438 rffM CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009286 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147400 wecG CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008321 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003906 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004490 CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008561 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012329 wecG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010711 wecG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007625 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008615 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008554 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007523 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008495 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007709 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008562 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008861 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003808 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003767 rffM CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004894 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008736 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008369 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008207 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007601 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112672 rffM CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085090 rffM CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004733 wecG CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102110 rffM CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005235 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009115 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008667 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000781 CDS
Person Approved Go view Shigella boydii 227 ADV-0004149 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009544 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007453 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004463 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075147 rffM CDS
Person Approved Go view Shigella flexneri 301 ABT-0090083 rffM CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003940 wecG CDS
Person Approved Go view Shigella sonnei 046 ADD-0004321 CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000995 VC0927 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000614 rffM CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001938 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000567 rffM CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003279 tagA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003092 rffM CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003327 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241906 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004628 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000207 rffM CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007655 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003524 rffM CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128285 rffM CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006016 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006465 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000838 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009073 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007230 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029974 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006912 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000140 rffM CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004166 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008316 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004124 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000193 rffM CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000224 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004776 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000342 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000692 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21458mutantTn5 InsertionRequest the StrainABE-0012394rffMwecG::Tn5KAN-I-SceI at position 444 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3974956 to 3985696
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012382rffCCDSforward39744673975141Upstream
ABE-0012384wecECDSforward39751463976276Upstream
ABE-0012386wzxECDSforward39762783977528Upstream
ABE-0174115wecFCDSforward39775253978604Upstream
ABE-0012392wzyECDSforward39786013979953Upstream
ABE-0012394rffMCDSforward39799563980696Matches
ABE-0012397yifKCDSforward39808873982272Downstream
ABE-0012399argXtRNAforward39823753982451Downstream
ABE-0012401hisRtRNAforward39825093982585Downstream
ABE-0012403leuTtRNAforward39826063982692Downstream
ABE-0012405proMtRNAforward39827353982811Downstream
ABE-0012408aslBCDSforward39829583984193Downstream
ABE-0285639repeat_regionforward39842203984323Downstream
ABE-0012411aslACDScomplement39843523986007Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.