Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012432 (cyaA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012432 showshow history
Names
cyaA cya JW3778 ECK3800 b3806
Product
adenylate cyclase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3991153 3993699 2547 849
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001450
EnteroFam0012432: Trusted threshold=2477.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000274 (IPR000274 Adenylate cyclase, class-I) Apr 2008
Automated Process Approved IPR024685 (IPR024685 Adenylate cyclase class-I, N-terminal domain) Jul 2018
Automated Process Approved PF01295 (PF01295 Adenylate cyclase, class-I) Jul 2018
Automated Process Approved PF12633 (PF12633 Adenylate cyclase NT domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006171 cAMP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000274
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004016 adenylate cyclase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000274
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name cyaA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3800 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3778 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym cya Published Annotation - PubMed ID: 4583241
Reference: Escherichia coli K-12 CA8000 		Jan 2007
Person Approved locus tag b3806 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Automated Process Approved product adenylate cyclase Experimental - PubMed ID: 3057176 Sep 2007
Protein Family
Person Approved EnteroFam EnteroFam0012432: Trusted threshold=2477.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001450
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF01295 Adenylate cyclase, class-I Protein Sequence Similarity - PFAM Model Name: PF01295
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR024685 Adenylate cyclase class-I, N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR024685
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000274 Adenylate cyclase, class-I Protein Sequence Similarity - InterPro Domain: IPR000274
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF12633 Adenylate cyclase NT domain Protein Sequence Similarity - PFAM Model Name: PF12633
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 4.6.1.1 Published Annotation - Swiss-Prot Accession Number: P00936 Feb 2006
Person Uncurated MultiFun 3.1.3.3 (regulation; type of regulation; posttranscriptional; inhibition / activation of enzymes) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P00936 Published Annotation - Swiss-Prot Accession Number: P00936 Jan 2005
Automated Process Approved db xref GeneID:947755 Published Annotation - Entrez Gene Database ID: 947755
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1790238 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P00936 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012432 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10170 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Global regulatory functions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated mutant phenotype cyaA null: no coordinate information; expression of cirA (ASAP:ABE-0007126) is reduced in a cyaA mutant, expression levels are restored by the addition of cAMP to the growth medium Experimental - PubMed ID: 2160948
Reference: Escherichia coli 		Mar 2007
Person Uncurated mutant phenotype cyaA null: no coordinate information; autoinducer-2 activity is higher in a cyaA null mutant as determined by a Vibrio harveyi BB170 luminescence bioassay Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Uncurated mutant phenotype cyaA null: no coordinate information; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in a cyaA null mutant, but not in a cyaA-crp* (gain of function) double mutant. This effect in the double mutant is abrogated by the addition of glycerol 3-phosphate, but only partially by the addition of glycerol Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Automated Process Approved note GO_component: GO:0005737 - cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76809.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006171 cAMP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000274
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004016 adenylate cyclase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000274
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001450 cyaA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000809 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000741 cyaA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000616 cyaA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000924 cyaA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000396 cyaA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002393 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002378 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000217 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004012 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004467 cyaA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000463 cyaA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004597 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015006 cyaA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003984 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000098 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296577 cyaA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000259 cyaA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000239 cyaA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001700 cyaA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007897 cyaA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004041 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007240 cyaA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003843 cyaA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000383 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010422 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008935 cyaA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006221 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080921 cyaA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004221 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004846 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006266 cyaA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009610 cyaA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004367 cyaA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008754 cyaA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002617 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008573 cyaA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007086 cyaA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007277 cyaA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008491 cyaA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010077 cyaA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008248 cyaA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007889 cyaA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005675 cyaA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007516 cyaA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009481 cyaA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008839 cyaA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006956 cyaA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028944 cyaA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009561 cyaA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008713 cyaA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004356 cyaA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003546 cyaA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004497 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004484 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004320 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004373 cyaA CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178496 cyaA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004169 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004167 cyaA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134826 cyaA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004780 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004374 cyaA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003836 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000941 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004353 cyaA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002247 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004616 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003273 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000157 cyaA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003404 cyaA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000575 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000170 cyaA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004216 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007923 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003600 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288624 cyaA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007160 cyaA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064513 cyaA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002469 cyaA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001131 cyaA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003416 cyaA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009256 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147380 cyaA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000231 cyaA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008333 cyaA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003892 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004502 cyaA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008572 cyaA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012356 cyaA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010683 cyaA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007613 cyaA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008626 cyaA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008223 cyaA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007535 cyaA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008147 cyaA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007721 cyaA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008574 cyaA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008849 cyaA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003819 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003778 cyaA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004908 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008748 cyaA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008891 cyaA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008219 cyaA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007613 cyaA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112654 cyaA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085080 cyaA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004745 cyaA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102136 cyaA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005224 cyaA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008833 cyaA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007979 cyaA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000774 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267960 CDS
Person Approved Go view Shigella boydii 227 ADV-0004160 cyaA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009682 cyaA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006786 cyaA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004449 cyaA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075132 cyaA CDS
Person Approved Go view Shigella flexneri 301 ABT-0090096 cyaA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003926 cyaA CDS
Person Approved Go view Shigella sonnei 046 ADD-0004332 cyaA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000129 VC0122 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000634 cyaA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001932 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000591 cya CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002506 cyaA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001711 cyaA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003757 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241939 cyaA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004643 cyaA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000223 cyaA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007642 cyaA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003531 cyaA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128250 cyaA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008090 cyaA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006478 cyaA CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008474 cyaA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007468 cyaA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029988 cyaA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006924 cyaA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000153 cyaA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004153 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008150 cyaA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004136 cyaA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000203 cyaA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000235 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004765 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000313 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000685 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21464mutantTn5 InsertionRequest the StrainABE-0012432cyaAcyaA::Tn5KAN-I-SceI at position 1522 in Minus orientation ,- pKD465Blattner Laboratory
FB21465mutantTn5 InsertionRequest the StrainABE-0012432cyaAcyaA::Tn5KAN-I-SceI at position 1522 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3986153 to 3998699
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0047274glmZncRNAforward39864323986638Upstream
ABE-0012417hemYCDScomplement39866863987882Upstream
ABE-0012419hemXCDScomplement39878853989066Upstream
ABE-0012425hemDCDScomplement39890883989828Upstream
ABE-0012427hemCCDScomplement39898253990766Upstream
ABE-0012432cyaACDSforward39911533993699Matches
ABE-0012435cyaYCDScomplement39937393994059Downstream
ABE-0285079yifLCDSforward39945223994725Downstream
ABE-0012442dapFCDSforward39947623995586Downstream
ABE-0012444yigACDSforward39955833996290Downstream
ABE-0012448xerCCDSforward39962873997183Downstream
ABE-0012450yigBCDSforward39971833997899Downstream
ABE-0012455uvrDCDSforward39979834000145Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.