Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012435 (cyaY) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012435 showshow history
Names
cyaY JW3779 ECK3801 b3807
Product
iron-binding frataxin homolog
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3993739 3994059 321 107
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001451
EnteroFam0012435: Trusted threshold=276.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002908 (IPR002908 Frataxin/CyaY) Apr 2008
Automated Process Approved PF01491 (PF01491 Frataxin-like domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0016226 iron-sulfur cluster assembly GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002908
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0008199 ferric iron binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002908
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name cyaY Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3801 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3779 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3807 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product iron-binding frataxin homolog Experimental - PubMed ID: 12140189
Reference: Escherichia coli 		Jan 2006
Automated Process Approved alternate product name iron-dependent inhibitor of iron-sulfur cluster formation; frataxin; iron-binding and oxidizing protein Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name frataxin, iron-binding and oxidizing protein Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012435: Trusted threshold=276.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001451
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR002908 Frataxin/CyaY Protein Sequence Similarity - InterPro Domain: IPR002908
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01491 Frataxin-like domain Protein Sequence Similarity - PFAM Model Name: PF01491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated comment an overlapping ORF on the forward strand named cyaX (ASAP:ABE-0012437) has been deaccessioned Published Sequence Analysis - PubMed ID: 6393056
Reference: Escherichia coli K-12 		Nov 2007
Automated Process Approved db xref ASAP:ABE-0012435 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11653 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790239 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947754 Published Annotation - Entrez Gene Database ID: 947754
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P27838 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P27838 Published Annotation - Swiss-Prot Accession Number: P27838 Jan 2005
Person Approved function possible iron chaperone Experimental - PubMed ID: 15276847
Reference: Escherichia coli 		Aug 2004
Person Approved note possibly involved in maintaining the intracellular iron pool in a soluble, non-toxic and bio-available form for biosynthetic pathways, while preventing the participation of iron in oxidative damage Experimental - PubMed ID: 15276847
Reference: Escherichia coli 		Aug 2004
Person Approved note cyaY is expressed Experimental - PubMed ID: 8874804
Reference: Escherichia coli 		Aug 2004
Person Approved note neither knock-out nor overexpression of cyaY in Escherichia coli affects cellular iron content or sensitivity to oxidants Experimental - PubMed ID: 10452520
Reference: Escherichia coli 		Aug 2004
Automated Process Approved note iron-binding frataxin homolog; cyaY is expressed; neither knock-out nor overexpression of cyaY in Escherichia coli affects cellular iron content or sensitivity to oxidants; possibly involved in maintaining the intracellular iron pool in a soluble, non-toxic and bio-available form for biosynthetic pathways, while preventing the participation of iron in oxidative damage Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76810.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0016226 iron-sulfur cluster assembly GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002908
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0008199 ferric iron binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002908
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001451 cyaY CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000808 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001550 cyaY CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001913 cyaY CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001667 cyaY CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002061 cyaY CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002376 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129860 cyaY CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105260 cyaY CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104707 cyaY CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000216 cyaY CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004011 cyaY CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004466 cyaY CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000462 cyaY CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004598 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015008 cyaY CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003983 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000097 cyaY CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001701 cyaY CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007896 cyaY CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004042 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007239 cyaY CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003844 cyaB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000382 cyaY CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010421 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008934 cyaY CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006222 CyaY CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080922 cyaY CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004222 cyaY CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004845 cyaY CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006267 cyaY CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009609 cyaY CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004368 cyaY CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008755 cyaY CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002618 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008574 cyaY CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007087 cyaY CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007278 cyaY CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008490 cyaY CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010078 cyaY CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008247 cyaY CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007890 cyaY CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005676 cyaY CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007517 cyaY CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009482 cyaY CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008838 cyaY CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006957 cyaY CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028945 cyaY CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009560 cyaY CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008714 cyaY CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004355 cyaY CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003534 cyaY CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003545 cyaY CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004496 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004485 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004319 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004374 cyaY CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178497 cyaY CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004170 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004168 cyaY CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134827 cyaY CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004781 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004375 cyaY CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000942 cyaY CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004354 cyaY CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002246 cyaY CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004617 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064511 cyaY CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003340 cyaY CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004303 cyaY CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003414 cyaY CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009254 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147379 cyaY CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000228 cyaY CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008336 cyaY CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003891 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004503 cyaY CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008573 cyaY CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012360 cyaY CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010681 cyaY CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007612 cyaY CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008627 cyaY CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008224 cyaY CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007538 cyaY CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008151 cyaY CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007724 cyaY CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008575 cyaY CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008848 cyaY CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003823 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003782 cyaY CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004913 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008751 cyaY CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008888 cyaY CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008220 cyaY CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007614 cyaY CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112650 cyaY CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085076 cyaY CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004750 cyaY CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102147 cyaY CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005223 cyaY CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008830 cyaY CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007983 cyaY CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000773 cyaY CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267959 cyaY CDS
Person Approved Go view Shigella boydii 227 ADV-0004161 cyaY CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009683 cyaY CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006785 cyaY CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004448 cyaY CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075131 cyaY CDS
Person Approved Go view Shigella flexneri 301 ABT-0090097 cyaY CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003925 cyaY CDS
Person Approved Go view Shigella sonnei 046 ADD-0004333 cyaY CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000130 VC0123 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000635 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001931 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000596 cyaY CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002507 cyaY CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001710 cyaY CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003857 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241940 cyaY CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004644 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000224 cyaY CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007641 cyaY CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003532 cyaY CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128248 cyaY CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008091 cyaY CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006479 cyaY CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002800 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008475 cyaY CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007469 cyaY CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029989 cyaY CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006925 cyaY CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000154 cyaY CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004152 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008149 cyaY CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004138 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000206 cyaY CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000239 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004763 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000310 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000684 cyaY CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3988739 to 3999059
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012419hemXCDScomplement39878853989066Downstream
ABE-0012425hemDCDScomplement39890883989828Downstream
ABE-0012427hemCCDScomplement39898253990766Downstream
ABE-0012432cyaACDSforward39911533993699Downstream
ABE-0012435cyaYCDScomplement39937393994059Matches
ABE-0285079yifLCDSforward39945223994725Upstream
ABE-0012442dapFCDSforward39947623995586Upstream
ABE-0012444yigACDSforward39955833996290Upstream
ABE-0012448xerCCDSforward39962873997183Upstream
ABE-0012450yigBCDSforward39971833997899Upstream
ABE-0012455uvrDCDSforward39979834000145Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.