Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012464 (corA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012464 showshow history
Names
corA JW3789 ECK3810 b3816
Product
magnesium/nickel/cobalt transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4001426 4002376 951 317
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002523 (IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB) Apr 2008
Automated Process Approved IPR004488 (IPR004488 Magnesium/cobalt transport protein CorA) Apr 2008
Automated Process Approved PF01544 (PF01544 CorA-like Mg2+ transporter protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0030001 metal ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002523
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002523
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0015693 magnesium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004488
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006824 cobalt ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004488
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002523
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015095 magnesium ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004488
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0046873 metal ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002523
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015087 cobalt ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004488
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name corA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK3810 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3789 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3816 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product magnesium/nickel/cobalt transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name Mg2+ transport, system I Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name Mg2+/Ni2+/Co2+ transport protein (Mg transport system I) (MIT family) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family PF01544 CorA-like Mg2+ transporter protein Protein Sequence Similarity - PFAM Model Name: PF01544
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004488 Magnesium/cobalt transport protein CorA Protein Sequence Similarity - InterPro Domain: IPR004488
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB Protein Sequence Similarity - InterPro Domain: IPR002523
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 4.9.A.17 (transport; Transporters of Unknown Classification; recognized transporters of unknown biochemical mechanism; The Metal Ion Transporter (MIT) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.121 (transport; substrate; Mg2+/Ni2+/Co2+) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11463 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012464 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ABI4 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0ABI4 Published Annotation - Swiss-Prot Accession Number: P0ABI4 Jan 2006
Automated Process Approved db xref GeneID:948351 Published Annotation - Entrez Gene Database ID: 948351
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:2367297 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Cations Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated mutant phenotype corA::kan; null mutant is highly sensitive to lactoperoxidase Experimental - PubMed ID: 16269676
Reference: Escherichia coli K-12 MG1655 		Nov 2005
Automated Process Approved note Mg2+ transport, system I; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76819.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0030001 metal ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002523
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002523
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0015693 magnesium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004488
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006824 cobalt ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004488
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002523
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015095 magnesium ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004488
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015087 cobalt ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004488
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0046873 metal ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002523
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Uncurated Go view Escherichia coli BL21(DE3) AHL-0003432 pseudogene
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000801 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000697 corA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001368 corA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001639 corA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001648 corA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002402 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002369 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000209 corA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004003 corA CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004459 corA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000455 corA CDS
Automated Process Approved Go view Dickeya chrysanthemi Ech1591 AFK-0004605 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015016 corA CDS
Automated Process Approved Go view Dickeya parazeae Ech586 AGC-0003976 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000090 corA CDS
Automated Process Approved Go view Erwinia amylovora ATCC 49946 ACW-0296598 corA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000266 pldA1 CDS
Automated Process Approved Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000246 corA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001711 corA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007885 corA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004052 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007229 corA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003855 corA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000369 corA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010411 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008922 corA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006235 CDS
Person Uncurated Go view Escherichia coli BL21(DE3) AHL-0003435 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080933 corA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004233 corA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004832 corA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006281 corA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009597 corA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004379 corA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008768 corA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002629 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008585 corA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007098 corA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007289 corA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008479 corA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010089 corA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008236 corA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007901 corA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005687 corA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007528 corA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009493 corA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008827 corA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006968 corA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028956 corA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009549 corA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008727 corA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003540 corA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003536 corA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004494 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004311 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004385 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178511 CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004184 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004179 corA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134836 corA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004792 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004388 corA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003844 corA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000950 corA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004361 corA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002239 corA CDS
Automated Process Approved Go view Musicola paradisiaca Ech703 AGA-0004625 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003280 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000149 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003411 corA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000568 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000177 corA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0004209 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007930 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003607 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288632 corA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007167 corA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064503 corA CDS
Automated Process Approved Go view Pectobacterium brasiliensis 1692 AED-0002453 corA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003216 corA CDS
Automated Process Approved Go view Pectobacterium parmentieri WPP163 AFJ-0002553 corA CDS
Automated Process Approved Go view Pectobacterium sp. PC1 AFL-0009246 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147367 corA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008347 corA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003884 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004514 corA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008582 corA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012383 corA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010657 corA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007602 corA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008636 corA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008234 corA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007547 corA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008162 corA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007735 corA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008584 corA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008839 corA CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003791 corA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004925 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008761 corA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008879 corA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008229 corA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007623 corA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112631 corA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085067 corA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004760 corA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102178 corA CDS
Person Approved Go view Salmonella Typhimurium plasmid R27 ACR-0246765 corA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005214 corA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008821 corA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007992 corA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000765 corA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265520 corA CDS
Person Approved Go view Shigella boydii 227 ADV-0004173 corA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009698 corA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006769 corA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004438 corA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075112 corA CDS
Person Approved Go view Shigella flexneri 301 ABT-0090110 corA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003911 corA CDS
Person Approved Go view Shigella sonnei 046 ADD-0004346 corA CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000436 corA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000649 corA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003370 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000622 corA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002517 corA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001698 corA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003168 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241957 corA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004656 corA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000235 corA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007630 corA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003542 corA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128226 corA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008102 corA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006490 corA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002811 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008486 corA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007480 corA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029999 corA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006936 corA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000165 corA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004141 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008138 corA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004149 corA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000216 corA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000252 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004751 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000286 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000677 corA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21469mutantTn5 InsertionRequest the StrainABE-0012464corAcorA::Tn5KAN-I-SceI at position 798 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3996426 to 4007376
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012448xerCCDSforward39962873997183Upstream
ABE-0012450yigBCDSforward39971833997899Upstream
ABE-0012455uvrDCDSforward39979834000145Upstream
ABE-0285640repeat_regionforward40001504000252Upstream
ABE-0174110yigECDScomplement40002924001056Upstream
ABE-0285819ysgDCDSforward40012184001274Upstream
ABE-0012464corACDSforward40014264002376Matches
ABE-0012466yigFCDScomplement40024194002799Downstream
ABE-0012468yigGCDScomplement40028134003193Downstream
ABE-0012472rarDCDScomplement40032884004178Downstream
ABE-0012474yigICDScomplement40042304004697Downstream
ABE-0012479pldACDSforward40048624005731Downstream
ABE-0012483recQCDSforward40058644007693Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.