Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012479 (pldA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012479 showshow history
Names
pldA JW3794 ECK3815 b3821
Product
outer membrane phospholipase A
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4004862 4005731 870 290
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001458
EnteroFam0012479: Trusted threshold=763.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003187 (IPR003187 Phospholipase A1) Apr 2008
Automated Process Approved IPR036541 (IPR036541 Phospholipase A1 superfamily) Jul 2018
Automated Process Approved PF02253 (PF02253 Phospholipase A1) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006793 phosphorus metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006629 lipid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003187
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003187
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0009279 cell outer membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0009279 cell outer membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004620 phospholipase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003187
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pldA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3815 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3794 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3821 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product outer membrane phospholipase A Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name outer membrane phospholipase A Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012479: Trusted threshold=763.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001458
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF02253 Phospholipase A1 Protein Sequence Similarity - PFAM Model Name: PF02253
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036541 Phospholipase A1 superfamily Protein Sequence Similarity - InterPro Domain: IPR036541
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003187 Phospholipase A1 Protein Sequence Similarity - InterPro Domain: IPR003187
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 3.1.1.- Published Annotation - Database Name: EC2GO: GO:0004620
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 3.1.1.32 Published Annotation - Swiss-Prot Accession Number: P0A921 Feb 2006
Person Approved EC number 3.1.1.4 Published Annotation - Swiss-Prot Accession Number: P0A921 Feb 2006
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.4 (location of gene products; outer membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.8.1 (metabolism; metabolism of other compounds; phosphorous metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10738 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012479 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948307 Published Annotation - Entrez Gene Database ID: 948307
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0A921 Published Annotation - Swiss-Prot Accession Number: P0A921 Jan 2006
Automated Process Approved db xref GI:2367300 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A921 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Phosphorus compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0009279 - cell outer membrane; GO_process: GO:0006793 - phosphorus metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76824.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Outer Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006793 phosphorus metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006629 lipid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003187
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0009279 cell outer membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003187
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0009279 cell outer membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004620 phospholipase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003187
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001458 pldA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000799 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001468 pldA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001581 pldA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002677 pldA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001649 pldA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002406 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002365 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000206 pldA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004000 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004456 pldA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000452 pldA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004609 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015021 pldA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003972 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000087 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296603 pldA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000268 pldA3 CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000248 pldA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001717 pldA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007877 pldA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004057 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007224 pldA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003860 pldA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000364 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010405 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008916 pldA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006241 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080938 pldA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004238 pldA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004826 pldA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006287 pldA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009591 pldA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004384 pldA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008775 pldA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002635 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008592 pldA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007105 pldA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007296 pldA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008472 pldA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010095 pldA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008229 pldA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007907 pldA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005694 pldA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007534 pldA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009500 pldA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008820 pldA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006975 pldA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028965 pldA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009544 pldA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008731 pldA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004451 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003545 pldA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003531 pldA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004477 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004509 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004306 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004390 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178516 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004191 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004184 pldA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134841 pldA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004798 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004393 pldA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003848 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000953 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004364 pldA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002236 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004629 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003284 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000145 CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000562 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000183 pldA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0004203 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007934 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003611 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288642 pldA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007171 pldA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064499 pldA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003342 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001124 pldA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002548 pldA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009241 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008352 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003879 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004519 pldA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008587 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012391 pldA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010649 pldA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007598 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008640 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008238 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007551 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008167 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007740 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008589 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008834 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003837 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003796 pldA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004930 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008766 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008874 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008232 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007626 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112624 pldA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085062 pldA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004766 pldA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102191 pldA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005209 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008816 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007997 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000762 CDS
Person Approved Go view Shigella boydii 227 ADV-0004178 pldA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009705 pldA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006760 pldA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004429 pldA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075107 pldA CDS
Person Approved Go view Shigella flexneri 301 ABT-0090115 pldA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003906 pldA CDS
Person Approved Go view Shigella sonnei 046 ADD-0004351 pldA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003373 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000631 pldA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002520 pldA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001695 pldA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003171 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241972 pldA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004659 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000238 pldA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007627 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003545 pldA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128211 pldA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008105 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006493 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002814 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008489 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007483 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030002 pldA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006939 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000168 pldA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004137 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008135 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004152 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000219 pldA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000255 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004747 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000272 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000674 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21474mutantTn5 InsertionRequest the StrainABE-0012479pldApldA::Tn5KAN-I-SceI at position 414 in Plus orientation ,+ pKD460Blattner Laboratory
FB21475mutantTn5 InsertionRequest the StrainABE-0012479pldApldA::Tn5KAN-I-SceI at position 414 in Plus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3999862 to 4010731
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012455uvrDCDSforward39979834000145Upstream
ABE-0285640repeat_regionforward40001504000252Upstream
ABE-0174110yigECDScomplement40002924001056Upstream
ABE-0285819ysgDCDSforward40012184001274Upstream
ABE-0012464corACDSforward40014264002376Upstream
ABE-0012466yigFCDScomplement40024194002799Upstream
ABE-0012468yigGCDScomplement40028134003193Upstream
ABE-0012472rarDCDScomplement40032884004178Upstream
ABE-0012474yigICDScomplement40042304004697Upstream
ABE-0012479pldACDSforward40048624005731Matches
ABE-0012483recQCDSforward40058644007693Downstream
ABE-0012487rhtCCDSforward40077574008377Downstream
ABE-0285641repeat_regionforward40083974008430Downstream
ABE-0012490rhtBCDScomplement40084394009059Downstream
ABE-0012494pldBCDSforward40091704010192Downstream
ABE-0012500yigLCDSforward40102004011000Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.