Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012490 (rhtB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012490 showshow history
Names
rhtB JW5585 ECK3818 yigK b3824
Product
L-threonine and related amino acid exporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4008439 4009059 621 207
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001460
EnteroFam0012490: Trusted threshold=268; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001123 (IPR001123 Amino acid exporter protein, LeuE-type) Apr 2008
Automated Process Approved IPR004778 (IPR004778 Homoserine/Threonine efflux protein) Apr 2008
Automated Process Approved PF01810 (PF01810 LysE type translocator) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006564 L-serine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001123
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001123
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004778
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005293 (DEPRECATED) lysine permease activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001123
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name rhtB Published Annotation - PubMed ID: 10386596
Reference: Escherichia coli 		Feb 2021
Person Approved synonym ECK3818 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5585 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yigK Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b3824 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product L-threonine and related amino acid exporter Experimental - PubMed ID: 12111147
Reference: Escherichia coli 		Feb 2021
Person Approved alternate product name neutral amino-acid efflux system Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name homoserine, homoserine lactone and S-methyl-methionine efflux pump Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name homoserine/homoserine lactone efflux protein (RhtB family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Uncurated alternate product name amino acid exporter (homoserine, HSL) Experimental - PubMed ID: 10386596
Reference: Escherichia coli 		Feb 2021
Protein Family
Person Approved EnteroFam EnteroFam0012490: Trusted threshold=268; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001460
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF01810 LysE type translocator Protein Sequence Similarity - PFAM Model Name: PF01810
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004778 Homoserine/Threonine efflux protein Protein Sequence Similarity - InterPro Domain: IPR004778
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001123 Amino acid exporter protein, LeuE-type Protein Sequence Similarity - InterPro Domain: IPR001123
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.90 (transport; substrate; homoserine/lactone) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.76 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Resistance to Homoserine/Threonine (RhtB) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.11 (metabolism; building block biosynthesis; amino acids; serine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948316 Published Annotation - Entrez Gene Database ID: 948316
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AG34 Published Annotation - Swiss-Prot Accession Number: P0AG34 Jan 2006
Automated Process Approved db xref GI:48994979 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AG34 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11469 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012490 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0006564 - L-serine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAT48223.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved sequence correction version m56: frameshift error corrected, allowing extended N-term. Experimental - GenBank Accession Number: AG613339
Reference: Escherichia coli 		May 2004
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001123
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006564 L-serine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004778
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001123
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005293 (DEPRECATED) lysine permease activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001123
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001460 rhtB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000143 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001623 rhtB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001959 rhtB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002819 rhtB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002054 rhtB CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002363 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000203 rhtB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003997 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004453 rhtB_3 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000448 rhtB_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004613 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015026 rhtB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003969 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000084 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296610 rhtB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000270 pldB1 CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000250 rhtB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007874 rhtB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004060 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007221 rhtB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003863 rhtB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000005 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010401 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008913 rhtB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006244 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080942 rhtB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004241 rhtB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004823 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006290 rhtB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009588 rhtB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004388 rhtB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008778 rhtB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002638 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008595 rhtB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007108 rhtB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007299 rhtB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008469 rhtB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010098 rhtB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008226 rhtB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007910 rhtB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005697 rhtB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007537 rhtB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009503 rhtB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008817 rhtB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006978 rhtB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028968 rhtB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009182 rhtB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008734 rhtB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004448 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003548 rhtB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003528 rhtB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004474 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004512 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004303 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178519 rhtB CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004194 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004187 rhtB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134844 rhtB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004801 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004397 rhtB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003851 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004368 rhtB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002233 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004633 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003288 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000141 rhtB CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003420 rhtB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000559 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000186 rhtB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004200 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007937 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003616 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288645 rhtB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007176 rhtb3 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064496 rhtB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004542 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002243 rhtB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002544 rhtB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009237 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000141 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008355 rhtB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003876 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004522 rhtB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008590 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012402 rthB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010637 rthB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007595 rhtB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008643 rhtB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008241 rhtB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007554 rhtB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008170 rhtB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007743 rhtB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008592 rhtB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008831 rhtB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003840 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003799 rhtB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004933 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008769 rhtB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008463 rhtB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008235 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007629 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112616 rhtB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085059 rhtB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004769 rhtB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102195 rhtB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005206 rhtB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008813 rhtB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008000 rhtB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000759 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263661 CDS
Person Approved Go view Shigella boydii 227 ADV-0004181 yigK CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009708 rhtB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006757 rhtB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004426 yigK CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075103 rhtB CDS
Person Approved Go view Shigella flexneri 301 ABT-0090118 yigK CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003903 yigK CDS
Person Approved Go view Shigella sonnei 046 ADD-0004354 rhtB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000143 VC0136 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003376 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000643 rhtB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002523 rhtB_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001692 rhtB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003174 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241981 rhtB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004662 rhtB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000242 rhtB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007624 rhtB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003548 rhtB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128191 rhtB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008108 rhtB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006496 rhtB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001028 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008492 rhtB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007486 rhtB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030005 rhtB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006942 rhtB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000172 rhtB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004133 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008132 rhtB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004155 rhtB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000222 rhtB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000259 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004743 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000256 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000671 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21479mutantTn5 InsertionRequest the StrainABE-0012490rhtByigK::Tn5KAN-2 at position 262 in Minus orientation ,+ pKD460Blattner Laboratory
FB21480mutantTn5 InsertionRequest the StrainABE-0012490rhtByigK::Tn5KAN-2 at position 262 in Minus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4003439 to 4014059
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012472rarDCDScomplement40032884004178Downstream
ABE-0012474yigICDScomplement40042304004697Downstream
ABE-0012479pldACDSforward40048624005731Downstream
ABE-0012483recQCDSforward40058644007693Downstream
ABE-0012487rhtCCDSforward40077574008377Downstream
ABE-0285641repeat_regionforward40083974008430Downstream
ABE-0012490rhtBCDScomplement40084394009059Matches
ABE-0012494pldBCDSforward40091704010192Upstream
ABE-0012500yigLCDSforward40102004011000Upstream
ABE-0012504bioPCDSforward40110764011975Upstream
ABE-0012506metRCDScomplement40118634012816Upstream
ABE-0012520metECDSforward40130534015314Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.