Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012494 (pldB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012494 showshow history
Names
pldB JW5584 ECK3819 b3825
Product
lysophospholipase L(2)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4009170 4010192 1023 341
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001461
EnteroFam0012494: Trusted threshold=961.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000073 (IPR000073 Alpha/beta hydrolase fold-1) Apr 2008
Automated Process Approved IPR022742 (IPR022742 Serine aminopeptidase, S33) Jul 2018
Automated Process Approved IPR029058 (IPR029058 Alpha/Beta hydrolase fold) Jul 2018
Automated Process Approved PF12146 (PF12146 Serine aminopeptidase, S33) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006793 phosphorus metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pldB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW5584 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3819 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3825 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product lysophospholipase L(2) Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name lysophospholipase L(2) Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name lysophospholipase L2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0012494: Trusted threshold=961.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001461
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR029058 Alpha/Beta hydrolase fold Protein Sequence Similarity - InterPro Domain: IPR029058
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF12146 Serine aminopeptidase, S33 Protein Sequence Similarity - PFAM Model Name: PF12146
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR022742 Serine aminopeptidase, S33 Protein Sequence Similarity - InterPro Domain: IPR022742
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000073 Alpha/beta hydrolase fold-1 Protein Sequence Similarity - InterPro Domain: IPR000073
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 3.1.1.5 Published Annotation - Swiss-Prot Accession Number: P07000 Feb 2006
Person Uncurated MultiFun 1.8.1 (metabolism; metabolism of other compounds; phosphorous metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948314 Published Annotation - Entrez Gene Database ID: 948314
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:48994980 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10739 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P07000 Published Annotation - Swiss-Prot Accession Number: P07000 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P07000 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012494 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Phosphorus compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0006793 - phosphorus metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAT48224.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved sequence correction version m56: A315 to R Experimental - GenBank Accession Number: AG613340
Reference: Escherichia coli 		May 2004
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006793 phosphorus metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001461 pldB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000797 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001012 pldB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001027 pldB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001920 pldB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000846 pldB CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000202 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003996 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004452 pldB CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000447 pldB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004614 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015027 pldB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003968 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000083 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296614 pldB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000271 pldB3 CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000251 pldB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001722 pldB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007873 pldB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004061 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007220 pldB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003864 pldB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000004 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010400 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008912 pldB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006245 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080943 pldB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004242 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004822 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006291 pldB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009587 pldB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004389 pldB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008779 pldB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002639 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008596 pldB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007109 pldB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007300 pldB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008468 pldB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010099 pldB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008225 pldB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007911 pldB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005698 pldB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007538 pldB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009504 pldB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008816 pldB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006979 pldB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028969 pldB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009181 pldB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008735 pldB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004447 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003549 pldB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003527 pldB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004473 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004513 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004302 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004394 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178520 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004195 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004188 pldB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134845 pldB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004802 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004398 pldB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003852 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004369 pldB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002232 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004634 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003289 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000140 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003421 pldB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000558 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000187 pldB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004199 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007938 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003617 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288646 pldB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007177 pldB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064495 pldB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002450 pldB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001121 pldB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002543 pldB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009236 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147323 pldB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008356 pldB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003875 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004523 pldB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008591 pldB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012406 pldB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010635 pldB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007594 pldB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008644 pldB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008242 pldB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007555 pldB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008171 pldB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007744 pldB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008593 pldB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008830 pldB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003841 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003800 pldB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004934 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008770 pldB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008462 pldB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008236 pldB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007630 pldB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112614 pldB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085058 pldB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004770 pldB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102199 pldB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005205 pldB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008812 pldB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008001 pldB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000758 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0268393 lypA CDS
Person Approved Go view Shigella boydii 227 ADV-0004182 pldB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009709 pldB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006756 pldB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004425 pldB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075102 pldB CDS
Person Approved Go view Shigella flexneri 301 ABT-0090119 pldB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003902 pldB CDS
Person Approved Go view Shigella sonnei 046 ADD-0004355 pldB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000142 VC0135 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000668 pldB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003377 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000647 pldB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002524 pldB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001691 pldB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003175 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241988 pldB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004663 pldB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000244 pldB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007623 pldB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003549 pldB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128189 pldB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008109 pldB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006497 pldB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001029 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008493 pldB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007487 pldB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030006 pldB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006943 pldB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000174 pldB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004132 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008131 pldB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004156 pldB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000223 pldB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000261 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004742 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000253 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000670 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4004170 to 4015192
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012472rarDCDScomplement40032884004178Upstream
ABE-0012474yigICDScomplement40042304004697Upstream
ABE-0012479pldACDSforward40048624005731Upstream
ABE-0012483recQCDSforward40058644007693Upstream
ABE-0012487rhtCCDSforward40077574008377Upstream
ABE-0285641repeat_regionforward40083974008430Upstream
ABE-0012490rhtBCDScomplement40084394009059Upstream
ABE-0012494pldBCDSforward40091704010192Matches
ABE-0012500yigLCDSforward40102004011000Downstream
ABE-0012504bioPCDSforward40110764011975Downstream
ABE-0012506metRCDScomplement40118634012816Downstream
ABE-0012520metECDSforward40130534015314Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.