Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012500 (yigL) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012500 showshow history
Names
yigL JW5854 ECK3820 b3826
Product
phosphosugar phosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4010200 4011000 801 267
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006379 (IPR006379 HAD-superfamily hydrolase, subfamily IIB) Apr 2008
Automated Process Approved IPR000150 (IPR000150 Cof family) Apr 2008
Automated Process Approved IPR013200 (IPR013200 (DEPRECATED) HAD superfamily hydrolase-like, type 3) Apr 2008
Automated Process Approved IPR036412 (IPR036412 HAD-like superfamily) Jul 2018
Automated Process Approved PF08282 (PF08282 haloacid dehalogenase-like hydrolase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006379
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000150
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006379
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yigL Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK3820 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5854 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3826 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product phosphosugar phosphatase Published Annotation - EcoCyc Accession Number: EG11470
Reference: Escherichia coli K-12 MG1655 		Jan 2021
Person Approved alternate product name predicted hydrolase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name conserved protein, phosphatase-like domain Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR006379 HAD-superfamily hydrolase, subfamily IIB Protein Sequence Similarity - InterPro Domain: IPR006379
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000150 Cof family Protein Sequence Similarity - InterPro Domain: IPR000150
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013200 (DEPRECATED) HAD superfamily hydrolase-like, type 3 Protein Sequence Similarity - InterPro Domain: IPR013200
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036412 HAD-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036412
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF08282 haloacid dehalogenase-like hydrolase Protein Sequence Similarity - PFAM Model Name: PF08282
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 3.-.-.- Protein Sequence Similarity - InterPro Domain: IPR013200
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11470 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:48994981 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:2847768 Published Annotation - Entrez Gene Database ID: 2847768
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P27848 Published Annotation - Swiss-Prot Accession Number: P27848 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P27848 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012500 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note conserved protein, phosphatase-like domain Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAT48225.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved sequence correction version m56: numerous sequence changes Experimental - GenBank Accession Number: AG613341
Reference: Escherichia coli 		May 2004
Person Approved sequence correction version m56: numerous sequence changes Experimental - GenBank Accession Number: AG613340
Reference: Escherichia coli 		May 2004
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006379
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000150
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006379
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000796 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001759 yigL CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001127 yigL CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000376 yigL CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001397 yigL CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002411 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002361 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129298 yigL CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104756 yigL CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104135 yigL CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000201 yigL CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003995 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004451 cof_2 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000446 cof_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004615 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0015028 yigL CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003967 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000082 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296616 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000272 yigL CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000252 yigL CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001723 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007872 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004062 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007219 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003865 CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000362 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010399 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008911 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006246 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080944 yigL CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004243 yigL CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004821 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006292 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009586 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004390 yigL CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008780 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002640 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008597 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007110 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007301 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008467 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010100 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008224 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007912 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005699 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007539 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009505 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008815 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006980 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028970 yigL CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009180 yigL CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008736 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004446 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003550 yigL CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003526 yigL CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004472 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004514 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004301 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004395 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178521 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004196 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004189 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134846 yigL CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004803 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004399 CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003853 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000517 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004370 yigL CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002231 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004635 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003290 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000139 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003422 yigL CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000557 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000188 yigL CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004198 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007939 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003618 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288647 CDSp
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007178 yigL CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064494 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002449 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001120 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002542 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009235 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147320 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003874 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004524 yigL CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012408 yigL CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010631 yigL CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003842 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003801 yigL CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004935 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112610 yigL CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085057 yigL CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004771 yigL CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102202 yigL CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000757 CDS
Person Approved Go view Shigella boydii 227 ADV-0004183 yigL CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009710 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006755 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004424 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075101 yigL CDS
Person Approved Go view Shigella flexneri 301 ABT-0090120 yigL CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003901 yigL CDS
Person Approved Go view Shigella sonnei 046 ADD-0004356 yigL CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000141 VC0134 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000669 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003378 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000649 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002525 cof_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001690 cof_2 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003176 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241989 cof3 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004664 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000245 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007622 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003550 CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128186 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008110 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006498 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001030 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008494 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007488 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030007 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006944 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000175 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004131 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008130 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004157 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000224 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000262 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004741 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000246 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000669 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4005200 to 4016000
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012479pldACDSforward40048624005731Upstream
ABE-0012483recQCDSforward40058644007693Upstream
ABE-0012487rhtCCDSforward40077574008377Upstream
ABE-0285641repeat_regionforward40083974008430Upstream
ABE-0012490rhtBCDScomplement40084394009059Upstream
ABE-0012494pldBCDSforward40091704010192Upstream
ABE-0012500yigLCDSforward40102004011000Matches
ABE-0012504bioPCDSforward40110764011975Downstream
ABE-0012506metRCDScomplement40118634012816Downstream
ABE-0012520metECDSforward40130534015314Downstream
ABE-0285642repeat_regionforward40153224015344Downstream
ABE-0012522ysgACDScomplement40153544016169Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.