Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012520 (metE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012520 showshow history
Names
metE metB12 JW3805 ECK3823 b3829
Product
5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4013053 4015314 2262 754
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001464
EnteroFam0012520: Trusted threshold=2192.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR006276 (IPR006276 Cobalamin-independent methionine synthase) Apr 2008
Automated Process Approved IPR013215 (IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal) Apr 2008
Automated Process Approved IPR002629 (IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal) Apr 2008
Automated Process Approved IPR038071 (IPR038071 UROD/MetE-like superfamily) Jul 2018
Automated Process Approved PF01717 (PF01717 Cobalamin-independent synthase, Catalytic domain) Jul 2018
Automated Process Approved PF08267 (PF08267 Cobalamin-independent synthase, N-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009086 methionine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009086 methionine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006276
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008652 cellular amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013215
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006556 S-adenosylmethionine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013215
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006276
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name metE Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW3805 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym metB12 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK3823 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3829 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name tetrahydropteroyltriglutamate methyltransferase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name 5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0012520: Trusted threshold=2192.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001464
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal Protein Sequence Similarity - InterPro Domain: IPR002629
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF08267 Cobalamin-independent synthase, N-terminal domain Protein Sequence Similarity - PFAM Model Name: PF08267
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal Protein Sequence Similarity - InterPro Domain: IPR013215
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01717 Cobalamin-independent synthase, Catalytic domain Protein Sequence Similarity - PFAM Model Name: PF01717
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006276 Cobalamin-independent methionine synthase Protein Sequence Similarity - InterPro Domain: IPR006276
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR038071 UROD/MetE-like superfamily Protein Sequence Similarity - InterPro Domain: IPR038071
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.1.1.14 Published Annotation - Swiss-Prot Accession Number: P25665 Feb 2006
Person Uncurated MultiFun 1.5.1.9 (metabolism; building block biosynthesis; amino acids; methionine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.20 (metabolism; central intermediary metabolism; S-adenosyl methionine biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948323 Published Annotation - Entrez Gene Database ID: 948323
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P25665 Published Annotation - Swiss-Prot Accession Number: P25665 Jan 2005
Automated Process Approved db xref GI:2367304 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P25665 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012520 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10584 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Methionine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note tetrahydropteroyltriglutamate methyltransferase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009086 - methionine biosynthetic process; GO_process: GO:0006556 - S-adenosylmethionine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76832.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated regulation expression regulated by luxS; expression of metE is down-regulated in a luxS null mutant grown in the absence of glucose as determined by RT-PCR and microarray data Experimental - PubMed ID: 16321939
Reference: Escherichia coli K-12 W3110 		Feb 2006
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009086 methionine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006276
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006556 S-adenosylmethionine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008652 cellular amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013215
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009086 methionine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013215
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006276
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001464 metE CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000859 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000286 metE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000589 metE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001814 metE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001287 metE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001472 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002457 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129300 metE CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104757 metE CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104137 metE CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000199 metE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003993 metE CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004448 metE_2 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000443 metE CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009103 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017716 metE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004072 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000080 metE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296634 metE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000277 metE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000257 metE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001726 metE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007870 metE CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004065 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007216 metE CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003868 metE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000359 metE CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010395 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008909 metE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006249 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080947 metE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004817 metE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006296 metE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009584 metE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004393 metE CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008783 metE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002643 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008600 metE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007113 metE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007304 metE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008464 metE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010103 metE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008221 metE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007915 metE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005702 metE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007542 metE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009508 metE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008812 metE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006983 metE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028973 metE CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009177 metE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008739 metE CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003552 metE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003523 metE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004469 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004298 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004199 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004191 metE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134849 metE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004806 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004402 metE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003884 metE CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000975 metE CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004373 metE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002229 metE CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004562 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003296 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000133 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003427 metE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000552 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000193 metE CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004193 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007943 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003624 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007183 metE CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060382 metE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000135 metE CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000048 metE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003033 metE CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009374 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146859 metE CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004252 metE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008360 metE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003871 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004528 metE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008594 metE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012421 metE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010619 metE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007591 metE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008647 metE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008245 metE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007558 metE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008174 metE CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007747 metE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008596 metE CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008827 metE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003845 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003804 metE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004939 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008774 metE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008458 metE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008239 metE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007633 metE CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112603 metE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085054 metE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004775 metE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102209 metE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005201 metE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008809 metE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008004 metE CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000718 metE CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264373 metE CDS
Person Uncurated Go view Shigella boydii 227 ADV-0004186 metE CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009712 metE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006752 metE CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004421 metE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075097 metE CDS
Person Approved Go view Shigella flexneri 301 ABT-0090123 metE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003898 metE CDS
Person Approved Go view Shigella sonnei 046 ADD-0004359 metE CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001777 VC1704 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006965 metE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001892 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000779 metE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002565 metE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001651 metE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001972 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242119 metE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007771 metE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000302 metE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007578 metE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003589 metE CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128020 metE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008152 metE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006540 metE CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008535 metE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007531 metE CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030049 metE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006986 metE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000230 metE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004077 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008086 metE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004199 metE CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000266 metE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000316 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004686 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000231 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000667 metE CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21482mutantTn5 InsertionRequest the StrainABE-0012520metEmetE::Tn5KAN-I-SceI at position 1080 in Plus orientation ,- pKD465Blattner Laboratory
FB21483mutantTn5 InsertionRequest the StrainABE-0012520metEmetE::Tn5KAN-I-SceI at position 1080 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4008053 to 4020314
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012487rhtCCDSforward40077574008377Upstream
ABE-0285641repeat_regionforward40083974008430Upstream
ABE-0012490rhtBCDScomplement40084394009059Upstream
ABE-0012494pldBCDSforward40091704010192Upstream
ABE-0012500yigLCDSforward40102004011000Upstream
ABE-0012504bioPCDSforward40110764011975Upstream
ABE-0012506metRCDScomplement40118634012816Upstream
ABE-0012520metECDSforward40130534015314Matches
ABE-0285642repeat_regionforward40153224015344Downstream
ABE-0012522ysgACDScomplement40153544016169Downstream
ABE-0012528udpCDSforward40164314017192Downstream
ABE-0012531rmuCCDSforward40173334018760Downstream
ABE-0012534ubiECDSforward40188554019610Downstream
ABE-0012536ubiJCDSforward40196244020229Downstream
ABE-0285643esrEncRNAforward40199784020229Downstream
ABE-0012539ubiBCDSforward40202264021866Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.