Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012528 (udp) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012528 showshow history
Names
udp JW3808 ECK3825 b3831
Product
uridine phosphorylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4016431 4017192 762 254
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001465
EnteroFam0012528: Trusted threshold=711.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000845 (IPR000845 Nucleoside phosphorylase domain) Apr 2008
Automated Process Approved IPR010058 (IPR010058 Uridine phosphorylase) Apr 2008
Automated Process Approved IPR035994 (IPR035994 Nucleoside phosphorylase superfamily) Jul 2018
Automated Process Approved PF01048 (PF01048 Phosphorylase superfamily) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009166 nucleotide catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010058
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009116 nucleoside metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010058
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004850 uridine phosphorylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010058
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name udp Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW3808 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3825 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3831 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product uridine phosphorylase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name uridine phosphorylase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012528: Trusted threshold=711.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001465
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF01048 Phosphorylase superfamily Protein Sequence Similarity - PFAM Model Name: PF01048
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR035994 Nucleoside phosphorylase superfamily Protein Sequence Similarity - InterPro Domain: IPR035994
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR010058 Uridine phosphorylase Protein Sequence Similarity - InterPro Domain: IPR010058
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000845 Nucleoside phosphorylase domain Protein Sequence Similarity - InterPro Domain: IPR000845
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.4.2.3 Published Annotation - Swiss-Prot Accession Number: P12758 Feb 2006
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012528 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11045 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P12758 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790265 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948987 Published Annotation - Entrez Gene Database ID: 948987
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P12758 Published Annotation - Swiss-Prot Accession Number: P12758 Jan 2005
Person Approved function enzyme; Salvage of nucleosides and nucleotides Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76834.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009166 nucleotide catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010058
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009116 nucleoside metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010058
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004850 uridine phosphorylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010058
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001465 udp CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000858 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000821 udp CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001394 udp CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002144 udp CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001532 udp CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001471 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002456 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000194 udp CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003991 udp CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004446 udp CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000441 udp CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009100 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017718 udp CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004070 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000077 udp CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296639 udp CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000279 udp CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000259 udp CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001728 udp CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007859 udp CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004082 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007214 udp CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003885 udp CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000341 udp CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010393 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008907 udp CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006251 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080969 udp CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004249 udp CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004815 udp CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006298 udp CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009582 udp CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004409 udp CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008785 udp CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002645 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008602 udp CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007115 udp CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007306 udp CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008462 udp CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010105 udp CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008219 udp CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007917 udp CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005704 udp CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007544 udp CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009510 udp CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008810 udp CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006985 udp CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028975 udp CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009158 udp CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008741 udp CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003554 udp CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003521 udp CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004467 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004519 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004296 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004201 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004204 udp CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134851 udp CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004808 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004420 udp CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003896 udp CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000985 udp CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004375 udp CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002227 udp CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004564 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003298 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000131 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003429 udp CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000550 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000195 udp CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0004191 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007945 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003626 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288661 udp CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007185 udp CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060386 udp CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000129 udp CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000049 udp CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003037 udp CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009366 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146853 udp CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008365 udp CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003868 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004531 udp CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008598 udp CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012429 udp CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010611 udp CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007586 udp CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008651 udp CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008249 udp CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007562 udp CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008179 udp CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007752 udp CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008600 udp CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008822 udp CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003848 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003807 udp CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004944 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008779 udp CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008455 udp CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008243 udp CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007637 udp CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112596 udp CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085051 udp CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004780 udp CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102222 udp CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005196 udp CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008804 udp CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008009 udp CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000716 udp CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267776 udp CDS
Person Approved Go view Shigella boydii 227 ADV-0004191 udp CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009720 udp CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006748 udp CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004419 udp CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075094 udp CDS
Person Approved Go view Shigella flexneri 301 ABT-0090125 udp CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003896 udp CDS
Person Approved Go view Shigella sonnei 046 ADD-0004363 udp CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001102 VC1034 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006958 udp CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001894 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000783 udp CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002567 udp CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001649 udp CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001970 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242121 udp CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007769 udp CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000305 udp CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007576 udp CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003591 udp CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128015 udp CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008154 udp CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006542 udp CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002204 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008537 udp CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007533 udp CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030051 udp CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006988 udp CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000233 udp CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004074 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008084 udp CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004201 udp CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000268 udp CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000319 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004683 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000224 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000664 udp CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21485mutantTn5 InsertionRequest the StrainABE-0012528udpudp::Tn5KAN-I-SceI at position 311 in Plus orientation ,+ pKD460Blattner Laboratory
FB21486mutantTn5 InsertionRequest the StrainABE-0012528udpudp::Tn5KAN-I-SceI at position 311 in Plus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4011431 to 4022192
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012504bioPCDSforward40110764011975Upstream
ABE-0012506metRCDScomplement40118634012816Upstream
ABE-0012520metECDSforward40130534015314Upstream
ABE-0285642repeat_regionforward40153224015344Upstream
ABE-0012522ysgACDScomplement40153544016169Upstream
ABE-0012528udpCDSforward40164314017192Matches
ABE-0012531rmuCCDSforward40173334018760Downstream
ABE-0012534ubiECDSforward40188554019610Downstream
ABE-0012536ubiJCDSforward40196244020229Downstream
ABE-0285643esrEncRNAforward40199784020229Downstream
ABE-0012539ubiBCDSforward40202264021866Downstream
ABE-0012541tatACDSforward40219454022214Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.